FMO08021.5prime Sequence
560 bp (560 high quality bases) assembled on 2009-09-01
> FMO08021.5prime
CAGTCGACATGGCGCAGAATATCAGCCCCGAGCAAAGTGGTGGAGCAGGC
GGCGGCGGCAGCAAGCACAGCGATGACTCCATGCCCGTGAAAGACAATCA
CGCCGTGAGCAAAAGACTGCACAAGGAACTGATGAACCTGATGATGGCCA
ACGAGAGGGGCATCTCAGCGTTTCCGGACGGCGAGAACATCTTCAAGTGG
GTGGGCACCATAGCGGGTCCACGGAACACGGTGTATTCGGGGCAAACGTA
TCGTTTGTCACTGGATTTTCCCAATTCCTATCCGTATGCAGCACCCGTGG
TGAAGTTCCTGACGTCCTGCTTCCATCCCAATGTTGATCTGCAGGGCGCC
ATCTGTTTGGACATACTGAAGGACAAATGGTCGGCCCTGTACGATGTGCG
CACCATTCTGCTGTCCATACAATCCCTGCTGGGCGAACCGAACAACGAGA
GTCCACTGAATGCGCAGGCCGCGATGATGTGGAATGACCAAAAGGAGTAC
AAAAAATATCTAGACGCCTTCTACGAGAAGCACAAGGACACCGCAAGCTT
TCTAGACCAT
FMO08021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-RA | 1464 | CG10682-RA | 254..788 | 8..542 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12504717..12505145 | 114..542 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 12504545..12504652 | 8..115 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:18 has no hits.
FMO08021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:45 Download gff for
FMO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 253..801 | 1..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:37 Download gff for
FMO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 248..796 | 1..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:53 Download gff for
FMO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 248..796 | 1..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:53 Download gff for
FMO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12504539..12504652 | 1..115 | 96 | -> | Plus |
| 3L | 12504719..12505153 | 116..551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:37 Download gff for
FMO08021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12497639..12497752 | 1..115 | 96 | -> | Plus |
| arm_3L | 12497819..12498253 | 116..551 | 99 | | Plus |
