FMO08022.5prime Sequence
660 bp (660 high quality bases) assembled on 2009-09-01
> FMO08022.5prime
CAGTCGACATGGGTTGGTCACCGCTGATGATAAGGTATCTGGCATTCCTC
TTCAATTTTCTTTGTGCGGTCCTGGGCATCGCCACTATTGTGGTCAATGT
AATAGCAATCGATCAAATAGCTCCAAAGGACCAACTCATCCTGGGACTGT
ACATTGCCGTTGGGTCCATCGTCTTCTTGCTCTCATTTTTTGGATGCTTT
GGTGCCATTAAGGAGAGCATCTGTGTTACCTGGGCGTATGCCACCTCGAT
GCTGGTAATGCTGATCGTCTCAATAGTCATGCTTTTTGTCTTCCGTATGC
ATTTCGAAGAAGACTCCATTACCAAGCTGAAACAAGCCTTTGCCAAGCAG
ACAAACACTTTCGACGCAATGGCCGAGTACCAGACACAGTACCAGTGCTG
TGGCATATACAAGTTAAAGGACTATGGAGACGCCTACATAACTGTTCCAA
GTAGCTGTTATGACCAAAATGATACGCCCCTACAGAGACGGTTGTCTGGC
CAAAATGGAGACCCAGTACGAGGAGCTCCTCAAGGGTCCTAAGATTGTTG
GCTGGATGCTGATGGTCATTGAGATAGGTGCCTTCACTTTCTCCACAATC
ATGGGAGTGTCCTTAAGGAACGAACTACGACGCTCTGCGTATGCAAGCTT
TCTAGACCAT
FMO08022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Er-RA | 848 | CG12837-RA | 94..727 | 8..642 | 3150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7065681..7065866 | 387..573 | 885 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7065131..7065299 | 68..236 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 7065359..7065512 | 236..389 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 7065922..7065992 | 572..642 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 7064492..7064554 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 1553..1592 | 226..188 | 107 | 77.5 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 797..836 | 226..188 | 107 | 77.5 | Minus |
FMO08022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:51 Download gff for
FMO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 72..714 | 1..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:18 Download gff for
FMO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 89..731 | 1..646 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:44 Download gff for
FMO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 89..731 | 1..646 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:44 Download gff for
FMO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7064487..7064552 | 1..68 | 94 | -> | Plus |
| 2R | 7065132..7065299 | 69..236 | 100 | -> | Plus |
| 2R | 7065360..7065512 | 237..389 | 100 | -> | Plus |
| 2R | 7065684..7065866 | 390..573 | 99 | -> | Plus |
| 2R | 7065924..7065996 | 574..646 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:18 Download gff for
FMO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2951992..2952057 | 1..68 | 94 | -> | Plus |
| arm_2R | 2952637..2952804 | 69..236 | 100 | -> | Plus |
| arm_2R | 2952865..2953017 | 237..389 | 100 | -> | Plus |
| arm_2R | 2953189..2953371 | 390..573 | 99 | -> | Plus |
| arm_2R | 2953429..2953501 | 574..646 | 97 | | Plus |
