FMO08024.5prime Sequence
155 bp (155 high quality bases) assembled on 2009-09-01
> FMO08024.5prime
CAGTCGACATGGTTTGCAAGGGTTGTGGAACAAACTGCCAGTGCTCGGCC
CAAAAGTGCGGGGACAACTGCGCCTGCAACAAGGATTGCCAGTGCGTTTG
CAAGAATGGGCCCAAGGACCAGTGCTGCAGCAACAAAGCAAGCTTTCTAG
ACCAT
FMO08024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnB-RC | 456 | CG4312-RC | 89..217 | 9..137 | 645 | 100 | Plus |
| MtnB-RB | 448 | CG4312-RB | 217..345 | 9..137 | 645 | 100 | Plus |
| MtnB-RA | 320 | CG4312-RA | 89..217 | 9..137 | 645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20503341..20503448 | 137..30 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 20535108..20535202 | 34..128 | 235 | 83.2 | Plus |
| 3R | 32079331 | 3R | 20360450..20360525 | 54..129 | 200 | 84.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:51 has no hits.
FMO08024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:49 Download gff for
FMO08024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 62..203 | 1..143 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:10 Download gff for
FMO08024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 81..222 | 1..143 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:29 Download gff for
FMO08024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 81..222 | 1..143 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:29 Download gff for
FMO08024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20503336..20503444 | 34..143 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:10 Download gff for
FMO08024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16329058..16329166 | 34..143 | 98 | <- | Minus |
