FMO08026.5prime Sequence
1147 bp (1023 high quality bases) assembled on 2009-09-01
> FMO08026.5prime
CAGTCGACATGTCCGCCCTGCGTCGGGTGCGCAAATACTTTATATCCTCT
CAGGTCTACGAGGCACTGCGTCCACTATTCTTCCTAACGTTTCTATACGG
ACTAACGCCATTTCATGTGGTCAGACGAAAGATGGGGGAATCCTACTTGA
AGATGTCCTGTTTCGGTGTCTTCAACATCTTCATTTACATCTGCCTCTGC
GGATTCTGCTACATTTCATCCCTGAGGCAGGGAGAATCCATTGTGGGATA
TTTCTTTCGCACCGAAATCTCCACAATCGGCGATCGTTTGCAGATCTTTA
ATGGTTTGATAGCTGGTGCTGTGATTTATACGTCGGCAATCCTAAAACGC
TGCAAGCTTTTGGGCACACTGACCATTCTACACAGCTTGGATACGAACTT
CTCGAACATTGGAGTACGTGTGAAATATTCGAGAATATTCCGGTACTCGC
TACTGGTGCTGATCTTCAAGCTACTGATCCTGGGTGTTTATTTCGTTGGA
GTTTTCCGGCTGCTCGTCTCCCTGGATGTCACACCATCGTTCTGCGTTTG
TATGACATTCTTTCTGCAACATTCGGTTGTCTCCATAGCGATTTGTTTGT
TCTGCGTGATTGCCTTCAGTTTCGAGCGGCGCCTCAGTATCATCAATCAG
GTGTTGAAGAACCTAGCCCATCAATGGGACACCCGAAGCCTCAAGGCAGT
GAATCAAAAACAGCGCTCTCTACAATGTCTCGATTCATTTTCCATGTACA
CCATTGTAACCAAAGATCCTGCGGAGATTATACAGGAGTCCATGGAGATA
CATCATCTCATTTGCGAGGCAGCTGCCACGGCTAACAAATATTTTACCTA
CCAATTGCTGACCATTATATCCATAGCATTTCTGATCATCGTTTTCGATG
CATACTATGTTCTGGAGACGCTACTGGGAAAATCGAAGCGCGAAAGCAAA
TTCAAAACTGTGAATTTGTGACATTTTTCTCGTGTCAATGATTTTGTATC
TGATCGCATATTTCATTGTCGAGGGAGTATCGAGCCATCAAAAAGAAGCG
AGAAACTGGAGCTATGTATTCTACTCAATAAACGTAGTGCTGAGTCAAGG
AGAACCTGCAGCAATTTCATGCATGAAGCATCGAAATATATTTTACT
FMO08026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr28b-RB | 1585 | CG13788-RB | 72..1195 | 9..1116 | 5105 | 97.9 | Plus |
| Gr28b-RD | 1505 | CG13788-RD | 628..1115 | 645..1116 | 1925 | 95.1 | Plus |
| Gr28b-RC | 1595 | CG13788-RC | 716..1205 | 643..1116 | 1920 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7459927..7460571 | 653..9 | 3225 | 100 | Minus |
| 2L | 23513712 | 2L | 7455403..7455764 | 1007..648 | 1695 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:00 has no hits.
FMO08026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:43 Download gff for
FMO08026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1215 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:43 Download gff for
FMO08026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1215 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:56 Download gff for
FMO08026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 65..1215 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:56 Download gff for
FMO08026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7455260..7455761 | 651..1132 | 94 | <- | Minus |
| 2L | 7459930..7460578 | 1..650 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:43 Download gff for
FMO08026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7455260..7455761 | 651..1132 | 94 | <- | Minus |
| arm_2L | 7459930..7460578 | 1..650 | 99 | | Minus |
