FMO08027.5prime Sequence
506 bp (506 high quality bases) assembled on 2009-09-01
> FMO08027.5prime
CAGTCGACATGCATGGCTATCGGGCCGGTCTTTATATAGTTTTTTCAGCC
GTGCTGGTAATGTTTATCGAGATCAAGTGGCTTGTGACTATCTTCCTGCA
ACTTCAGTGCGCAGAGGATAATTACCAGCGAAGGTCCTGCAGCTGCTTGG
CCTGCTGGCGACTTTCAGCGATTTGTGGCGGTTGGCGACCCACTCCTGTT
TATGCGGTCATCGGCATCTGCCTGATCCTGTATCCCCACAATCTGTGGCT
GAGTTATGTGGCCGGGATGTTCCTGATACTCCTCGGACTCCTCAGACTGT
GCACGCTGCTCCGATTCAGCGCCTCGAAGGAGGAGGGTCTCCTGCCGCAG
TGCGACTTTGAAAAGGTGTCGAGCTTTGTGGATACCATGGAGGATGATTT
CGCGGAGATTGGTGCCACGCAAGCGGGATTGGATGAGGAAGCGGAGGAGG
AGGGCGACGACCACACCGCCCTAGACGACGATGTTTGCGCAAGCTTTCTA
GACCAT
FMO08027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14086-RD | 1536 | CG14086-RD | 953..1438 | 3..488 | 2415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19279385..19279634 | 116..365 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 19279698..19279821 | 365..488 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 19279040..19279115 | 41..116 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:51 has no hits.
FMO08027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:42 Download gff for
FMO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14086-RA | 120..570 | 40..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:30 Download gff for
FMO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14086-RC | 148..637 | 1..497 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:41 Download gff for
FMO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14086-RD | 950..1447 | 1..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:41 Download gff for
FMO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19278949..19278989 | 1..40 | 92 | -> | Plus |
| 3L | 19279040..19279114 | 41..115 | 100 | -> | Plus |
| 3L | 19279385..19279633 | 116..364 | 100 | -> | Plus |
| 3L | 19279698..19279830 | 365..497 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:30 Download gff for
FMO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19272485..19272733 | 116..364 | 100 | -> | Plus |
| arm_3L | 19272049..19272089 | 1..40 | 92 | -> | Plus |
| arm_3L | 19272140..19272214 | 41..115 | 100 | -> | Plus |
| arm_3L | 19272798..19272930 | 365..497 | 97 | | Plus |
