FMO08031.5prime Sequence
353 bp (353 high quality bases) assembled on 2009-09-01
> FMO08031.5prime
CAGTCGACATGCACTTCAGGTCGTTGTTCTGGAGAGCCGTGGTCAGGTCC
GAAGACCGATTAGGGGATCCAGCTGGCTACATACGCAACCCTATGGGTGA
CGAGATGTCCAAGCACAAAAAGTTCATCTTCCTGACGTGGATCGGGCAGG
AGGTGGGCGTTATCCAGCGGGCCAAGATGTCCACGGACAAGGCGCTGATC
AAGGATGTCCTCAACAATTTTGCCGTGGAACTTCAGGCGGGAGTGGAGGC
CGAGCTGGACATTGAGCTCTTCCGTGAAGCACTGAACCTCCAAGTTACTT
TATATATACTGCTTACCAAACTGCTCCTTTCTCTTGCAAGCTTTCTAGAC
CAT
FMO08031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6891-RC | 950 | CG6891-RC | 541..755 | 74..288 | 985 | 97.2 | Plus |
| CG6891-RB | 805 | CG6891-RB | 396..610 | 74..288 | 985 | 97.2 | Plus |
| CG6891-RA | 994 | CG6891-RA | 585..799 | 74..288 | 985 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18785721..18785927 | 9..215 | 1005 | 99 | Plus |
| X | 23542271 | X | 18780863..18781004 | 74..215 | 620 | 95.8 | Plus |
| X | 23542271 | X | 18786001..18786120 | 216..335 | 600 | 100 | Plus |
| X | 23542271 | X | 18781078..18781150 | 216..288 | 365 | 100 | Plus |
| 3L | 28110227 | 3L | 23303634..23303701 | 9..76 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26068213..26068280 | 9..76 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26076804..26076871 | 9..76 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26095789..26095856 | 9..76 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26104674..26104741 | 9..76 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26120181..26120248 | 9..76 | 235 | 89.7 | Plus |
| 2R | 25286936 | 2R | 1567184..1567251 | 9..76 | 235 | 89.7 | Plus |
| X | 23542271 | X | 6434473..6434540 | 9..76 | 220 | 88.2 | Plus |
| X | 23542271 | X | 22710987..22711054 | 9..76 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 26601233..26601300 | 76..9 | 220 | 88.2 | Minus |
| 3L | 28110227 | 3L | 27049779..27049846 | 76..9 | 220 | 88.2 | Minus |
| 3L | 28110227 | 3L | 12923766..12923833 | 9..76 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 24422187..24422254 | 76..9 | 220 | 88.2 | Minus |
| 3L | 28110227 | 3L | 24485752..24485819 | 9..76 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 23477816..23477874 | 73..15 | 205 | 89.8 | Minus |
| 3L | 28110227 | 3L | 13575582..13575649 | 76..9 | 205 | 86.8 | Minus |
| 3L | 28110227 | 3L | 20323666..20323729 | 74..9 | 190 | 89.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 666..741 | 84..9 | 272 | 84.2 | Minus |
FMO08031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:40 Download gff for
FMO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6900-RA | 1..330 | 9..339 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:37 Download gff for
FMO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 585..802 | 74..294 | 95 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:50 Download gff for
FMO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 585..802 | 74..294 | 95 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:50 Download gff for
FMO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18785715..18785927 | 3..215 | 97 | -> | Plus |
| X | 18786001..18786125 | 216..343 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:37 Download gff for
FMO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18679748..18679960 | 3..215 | 97 | -> | Plus |
| arm_X | 18680034..18680158 | 216..343 | 96 | | Plus |
