FMO08033.5prime Sequence
637 bp (637 high quality bases) assembled on 2009-09-01
> FMO08033.5prime
CAGTCGACATGATCAATCCCCAACTTTTGCTGATCGCCGCGCTTATTGCG
TTTATTGGGAAAGTGGCACACGCTCAAATCGCCTTTGTTGAGGATCAAGA
CATTGATAAGAAGAAGGCCAACCTTGCGGGTCGCAAGCCACTGTATTCGC
CAGCCCGATGCCCCAAGCACCAGCTTCTTTATCCGGGGGACCAGCAGAAG
CAGAACGACTGGGTTTGCGACTGCGCGCCAGCCACACTGTATTACCCGGA
GACCGATGGCTGCTATCCGGCCTACCGACAGGGACCCTGTGAGGCTGGAC
AGATTCTGGTGCTCTACAAGGAGGAGATCATCCCGAAGTGCGTACGAAAT
CCATGTAACAGGGACGGACACTTTATGATTCGCGACACATGCTATGAGTT
CGGAAACACCAAGAAGGAAGAAAACCCGTGTCCTTACCAGGAGGCTTCCT
TTGTACTTGGCGTGAATCCCACCAACTTGATGGTGGACTGTGTGAAGCTG
TCCGTTCAACTGGAGACGCGTATTTCGGACACGGAGCAGGCCTCCGCCGG
AATACTACGTTGATTTGGCCGAGAAATGCGCACGCGGCAGTCGCCTAATG
GCTCAGGGAAAGTGTCCTGCAAGCTTTCTAGACCATT
FMO08033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12811-RA | 1002 | CG12811-RA | 262..870 | 9..618 | 3025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10047384..10047771 | 618..230 | 1895 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10048416..10048536 | 129..9 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 10047841..10047944 | 231..128 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:38 has no hits.
FMO08033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:39 Download gff for
FMO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 1..612 | 9..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:09 Download gff for
FMO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 256..879 | 1..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:57 Download gff for
FMO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12811-RA | 256..879 | 1..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:57 Download gff for
FMO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10047374..10047769 | 232..627 | 98 | <- | Minus |
| 3R | 10047841..10047943 | 129..231 | 100 | <- | Minus |
| 3R | 10048417..10048542 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:09 Download gff for
FMO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5873096..5873491 | 232..627 | 98 | <- | Minus |
| arm_3R | 5873563..5873665 | 129..231 | 100 | <- | Minus |
| arm_3R | 5874139..5874264 | 1..128 | 96 | | Minus |
