FMO08042.5prime Sequence
797 bp (797 high quality bases) assembled on 2009-09-01
> FMO08042.5prime
CAGTCGACATGTGTGTGAGAAGCTCACTGGGCAGTGTGATTTTAATTTAC
TTTGTCATCTTGCTTCGTTTGGTCAACTTGGTGCTGGCCCAGAACGAAGG
GAATATATCGGAATCGACGGTGGCCACGGGCCGCGAGGAGTGCGGCAGCA
CGCAGAAAATGGTGGACGAGTGCTTCAAGGATCTGCCGCCGCATCTAATG
GATTTCCTACAGAACACGAAAATCGTCATCAGCAAAAAGGAGATCACCGC
CAAGTGCAACATATTCAACCGTGGCATGAGGTGCTTCGATACTTACTCCA
AGCGTTGCCTGGACGATCGAAAGATGGGCACGTTTAAGAATAATGTGGAG
GGAGCTCGGCGATTTTTCTACAAGTTCTGCGGCGACGCCGATTTTCAGCG
TGACTATCTGAGGCACAAGGACTGCTTTGCATACATCCAACTGGACTGGG
TCACCTGCACCACCGAGTTCGAGAACATCCTTAGTGAAGAGGTGCACGAC
GAAAGGCGCAACGCCAGCGAAAAGTTCCTCGAATTCTGCTGTGCCCGCTA
CGCGTACGAGAACTGCATCTACAACAGTGCCCGCTTCAAGTGCTACAAAA
ACTCGGCGGAGTTTGCCCGCGAGACGGCCAAAATGCTGTCGGATGAGAAG
CACTTTAGGAACTGTGCCGTCCTCCAGAACATCTGTGCCCACGACGCCGC
CGTGGCATTGGCCCAGTGGCACTGGATGGCGACGCCGATGATGCTGCTCC
TGATGCGGCTGGTGGTGCGGATCTGGGCGGCAAGCTTTCTAGACCAT
FMO08042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13408-RA | 1189 | CG13408-RA | 81..851 | 9..779 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22080462..22080712 | 9..259 | 1255 | 100 | Plus |
| 3R | 32079331 | 3R | 22082897..22083135 | 541..779 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 22081802..22081949 | 255..402 | 725 | 99.3 | Plus |
| 3R | 32079331 | 3R | 22082248..22082387 | 402..541 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:19 has no hits.
FMO08042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:32 Download gff for
FMO08042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 1..774 | 9..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:01 Download gff for
FMO08042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 72..854 | 1..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:02 Download gff for
FMO08042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13408-RA | 72..854 | 1..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:02 Download gff for
FMO08042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22080453..22080712 | 1..259 | 98 | -> | Plus |
| 3R | 22081807..22081949 | 260..402 | 100 | -> | Plus |
| 3R | 22082249..22082387 | 403..541 | 100 | -> | Plus |
| 3R | 22082898..22083138 | 542..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:01 Download gff for
FMO08042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17906175..17906434 | 1..259 | 98 | -> | Plus |
| arm_3R | 17907529..17907671 | 260..402 | 100 | -> | Plus |
| arm_3R | 17907971..17908109 | 403..541 | 100 | -> | Plus |
| arm_3R | 17908620..17908860 | 542..783 | 99 | | Plus |
