FMO08043.5prime Sequence
955 bp (955 high quality bases) assembled on 2009-09-01
> FMO08043.5prime
CAGTCGACATGTGGGTAAGCCTGGTTAGAAATCACAGCAGTTGGGGAATT
AGCAAAATGGGCAAATCGCAAAATAATACTGGTTCGCTTTTGCTACTGAT
TATACTGGGCATTTCTCTGGGAGATTCCATGCCCCTGGAGGATATGGACT
CCCAGGAAATGATTGACTTGACAGATCTTGGAGATACTCTGTTCGGTAAT
CCGGACGTGGAGACGACTGGAGCTTTGGTTGAGGCACTCGGTGTGGAATC
CCCGCTGAATCCCGAGGAGCTGGGAACCTACCACGAAGGTGACATCCTGA
TTCCACTGAGCTACAGGGACGCCCGATTCAATGGCACTCGTAATGGCATT
TTGGCGCTGAGTTCCCGCTGGCCGGGCGGCGTTGTGCCCTACGAGATCAA
AGGTCCTTTTACCAGCCAGGAATTGGGGAATATTAACCACGCTTTTAAGG
AATACCACACCAAAACATGCGTGCGCTTCAAGCCCAGGACCACCGAAAAG
GATTACATCTCCATTGGTAGCGGAAAGTCTGGCTGCTGGAGTAGCATTGG
GCGCTTAGGTGGTCGCCAGGAAGTGAATCTGCAGTCGCCCAACTGCTTGC
GTACATACGGCACTCCCATTCACGAGCTGATGCACGCCCTGTGCTTCTTC
CATGAGCAGAATCGTCACGAACGTGACTCCTATGTGCGCGTGATGAAGGA
CAACATCAAGCCCGAGATGATGGTCAACTTCGAGAAGTCCAGTTCCAGGA
CACAGTACGGCTTCGGCGTGAAATACGACTATGGCAGTGTGATGCACTAC
TCCCCCACCAGTTTCACTCGGAATGGCCAGCCCACGTTGAAGCACTGCGT
GCCACATCCGATGCCAGCCAGATGGGTCAACGCAAGGCTTCTCAGCCGGA
GAATGTGCGCAAGATCAACGCAATGTACAAGTGCAAGTGCAAGCTTTCTA
GACAT
FMO08043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5715-RA | 978 | CG5715-RA | 1..911 | 28..937 | 4455 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24293433..24293923 | 937..448 | 2280 | 99 | Minus |
| 3R | 32079331 | 3R | 24293977..24294418 | 450..9 | 2210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:41 has no hits.
FMO08043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:31 Download gff for
FMO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 968..1897 | 9..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:19 Download gff for
FMO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 1..911 | 28..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:49 Download gff for
FMO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 1..911 | 28..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:49 Download gff for
FMO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24293433..24293921 | 450..937 | 98 | <- | Minus |
| 3R | 24293978..24294418 | 9..449 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:19 Download gff for
FMO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20119155..20119643 | 450..937 | 98 | <- | Minus |
| arm_3R | 20119700..20120140 | 9..449 | 100 | | Minus |
