FMO08044.5prime Sequence
1122 bp (1013 high quality bases) assembled on 2009-09-01
> FMO08044.5prime
CAGTCGACATGATGTGGCGCCAGCAGGCGAACATCGACCCCAATGAGGAT
CCTGCCGAGGCATCACATGCTGTGCACGGCATTAATCAACAATCGCTGCA
AAAGTTTGCAACATGCCTGCAACATATTTCCCAATTACTGGAGTGTCCTG
TGTGCCTTGAGGTCATCAAACCACCTGGCTGGCAGTGCTGCAATGGACAC
GTGCTCTGCAATAATTGCCGCAGTCGCTCCGTAAAGTGTCCCGTGTGCCG
AGTTCCTTTGGGGCCGAGAGGCCGCTGTCTGCTGTCGGACAAACTGTTCA
CCCTGCTGGCGGAGAGTTTCCCCTGCGATGGCGGGAAAACCAACAAGGTG
GCTGCCTCCCAGGGCCATGGAAAGCTGAGCAGCGTCAACAAGTGCACAAA
TGAATATCATAATCAACCGAAAATGGCGCTGGCGAAGACGAGTTCCGGCA
AGTCCAAGTGCGGCAAGCAAATCTCCAGGCAACTCGAAACAGTTTTGGTG
GACCAAAGTCCTCGGGAAATCAGAAGAAAGAGTCAGCAGGGGCAGGAGCA
GGAGCAGGCGGTGCAGGAGGCTGTCCTGCCACGTTGCACGCTGATAAAAG
TGCAGCATCAGGAGGCCGCTGTCGAGCACTTTTCGGAGGAAGGTCACAAC
AATATGCTCGTTAAACCAAAGTTAAAGTTGAGTAAGAAAAGTTGGCGGAT
TACTGGGCCAGATCAAGACGGATTGCGCTGCGATGAAGTTGCCACCATAA
ATAATGGTGTCCAGGTGCAGGAGCAACAGCAGCAGCAGGAGCGGCAGCAG
CTGGGGCATGAGAAGTCAGCAAGCAGCGAGAGCGAGTATCAAAATTATCA
TTGCCCAACTGGGAAATCATGCAGCAGCCACAGTTACCAACTTGGCCAGC
CAGTGACAACAAATTGTCAACAGTCGCGATGCAGCGCTGGCGGTGGTTGA
GAACTCGGGAGGTGCATCTTATCAGCGGGGAGCCATAAACAGCGCCGCAG
CCGGAGTAATCAAGAGCTGCCACTGGAGGCGGGTCAATAGTCGGCGGGAT
GGCAGTTGTGCGACATTTGACGGCAACATCGCTGCATTTGCAAATCTACG
TACGTCGCAACGCTGCAGTCCG
FMO08044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34375-RA | 2218 | CG34375-RA | 451..1522 | 9..1070 | 5080 | 98.9 | Plus |
| CG34375-RC | 2070 | CG34375-RC | 300..1374 | 9..1070 | 5040 | 98.6 | Plus |
| CG34375-RB | 2221 | CG34375-RB | 451..1525 | 9..1070 | 5040 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23000835..23001582 | 1070..333 | 3210 | 98.4 | Minus |
| 3R | 32079331 | 3R | 23002841..23003015 | 334..160 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 23006593..23006682 | 163..74 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 23008002..23008067 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 4290..4374 | 498..578 | 119 | 62.4 | Plus |
FMO08044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:30 Download gff for
FMO08044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1576 | 9..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:16 Download gff for
FMO08044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1576 | 9..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:41 Download gff for
FMO08044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1576 | 9..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:41 Download gff for
FMO08044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23000781..23001581 | 334..1114 | 96 | <- | Minus |
| 3R | 23002842..23003013 | 162..333 | 100 | <- | Minus |
| 3R | 23006595..23006681 | 75..161 | 100 | <- | Minus |
| 3R | 23008002..23008067 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:16 Download gff for
FMO08044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18826503..18827303 | 334..1114 | 96 | <- | Minus |
| arm_3R | 18828564..18828735 | 162..333 | 100 | <- | Minus |
| arm_3R | 18832317..18832403 | 75..161 | 100 | <- | Minus |
| arm_3R | 18833724..18833789 | 9..74 | 100 | | Minus |
