FMO08047.5prime Sequence
1021 bp (922 high quality bases) assembled on 2009-09-01
> FMO08047.5prime
CAGTCGACATGGCGGAGGAGCTAAAAGTGTTCTTCGAAGAGTGTCGTGGA
CAAGGGTTTTCCGCAAAGGAAATGCTGGCTGTATGTCAACCTTTGATTTG
GAGAATCCGCTTGGCTCGAATCAAGAAATGGTTCTTCATCCTACTGCCCC
TGATGGTTATTTATCTGCTTTGGCTATGCAGTGACACCTTTTCTTGGTGG
CTAAGTGCCCTGGGTCGATTGGTGCTCATACAGATCCTTCCACTCTGGGA
TTGGCGGCCCTACTATCATGCCAAGTGCCTGATACCACGCGATCAAAGTG
TCCAAGAGCAGGCACCATCATTGGGTAAAGCGGAGACCTTGCGGCAGAAT
TGCGATCTCTGTGAAGGTTTGGAGGGAATAGGCACGGTTTCCAATGTAAG
CTACTCCTCCTTGGAGTCTGAGCACCTAGAACGTGGGCAACCAGTGATTA
TAACAGACACTGGACTGCAAACGGATGTTTTTAGTCTCCTAGAGCAAATA
GAGAAGAAGTCACCTCAGTGGCTAACCAGTGAACCTTGTGATGTTTCCAG
CAATCTGTTGCTGAGGAAACTTTTTAACCTAGAGGCGGCTCTGGATAAGA
TTCATTCCTGGCAGGGACAGACATCGAATTCTTGGCACCTTCAACTGAGG
AACTGCCAGAAGAAGGCGGTGAAGTCCTCTCGGCTTTTTCTGGATCGTCC
CTACTACTACCCACTTCACCTGGCCCCGTATTACTCCAGCTGGCTATTGA
CAGTCCATCAGCAAAAGCGAAACCAAGCCGATATATACGTGCGTGGCCTA
GTGCTCATCCAGCAACTGAGTGGCCACTTTGAGATGGTTCTCCATCCAAA
GAAGCCCTGCAATAAAGAATATGTCCAAGCTTGCGGATGCGACTGAATGC
AGGAGAAGTCTGATTCTTTACCACGATATCTGGAGCTAAGTTATGGTCTG
GAGAAACCCCACGAAAGCTGACTTCCTGCTAGCATTTTCGAGATAGACTG
CAGCGCAGCTTTCTAGAACAT
FMO08047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30053-RA | 1088 | CG30053-RA | 17..1016 | 7..1000 | 4760 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12688805..12689439 | 1000..372 | 2775 | 97.6 | Minus |
| 2R | 25286936 | 2R | 12689495..12689860 | 372..7 | 1815 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:15 has no hits.
FMO08047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:38 Download gff for
FMO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30053-RA | 1..1008 | 9..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:19 Download gff for
FMO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30053-RA | 12..1021 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:33 Download gff for
FMO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30053-RA | 12..1021 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:33 Download gff for
FMO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12688800..12689438 | 373..1004 | 98 | <- | Minus |
| 2R | 12689495..12689864 | 1..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:19 Download gff for
FMO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8576305..8576943 | 373..1004 | 98 | <- | Minus |
| arm_2R | 8577000..8577369 | 1..372 | 98 | | Minus |
