FMO08051.5prime Sequence
882 bp (882 high quality bases) assembled on 2009-09-01
> FMO08051.5prime
CAGTCGACATGTTCAGTATCAGCGAGCTCTGTTGCATGTTTTGCTGCCCC
CCGTGTCCGGGTCCCATTGCGGCCAAGTTGGCCTTCCAGCCGCCGGAGCC
CACGTACAAATTGACCCCGGCGGACGACACCAACATCCGGTACAACCTGC
AGTTGTTCGACCGCGCCGAGTGGCAGTACTCTGAACGTGAGAAATCGAAA
GTGGAGGCCTTCTTTACGCGCACCTCGCGTGGCAACCTGATCACCTGCAT
CTATGTCAGGTGCAGCAAGAATGCCAAGTACACACTTCTCTTCTCCCACG
GGAATGCAGTGGATTTGGGCCAAATGAGCAGCTTCTACCTGACCCTGGGC
TCCCAGATCAACTGCAATATCTTTGGGTACGACTACTCCGGGTACGGAAT
GAGTGGCGGCAAGCCGTCCGAGAAGAATCTGTATGCGGACATCGAGGCTG
CCTGGCAGGCGATGAGAACCAGATTCAACATCAGCCCGGAGACAATCATC
TTGTATGGCCAAAGCATTGGCACTGTGCCCACTGTGGACCTGGCCTCGCG
TCACGAGGTCGGCGCTGTGATACTCCATTCGCCGCTGATGTCCGGCCTAA
GGGTCGTCTTTAGGAACACAAAGAGAACCTGGTTCTTCGACGCCTTTCCC
AGCATTGATAAGGTGGCTAAGTGAAGGCTCCGGTTCTGGTTATCCACGGC
ACCGATGATGAGGTCATTGACTTTTCCCATGGCATCGGAATCTACGAGCG
GTGTCCTAAGACTGTCGAGCCGTTTTGGGTGGAGGGTGCTGGACATAATG
ATGTGAAACTGCATCCGCATTATTACGAGCGACTGCGCAAATTTCTTTCG
GTGAACTCGTCAAAGCAAGCTTTCTAGACCAT
FMO08051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33096-RG | 3581 | CG33096-RG | 334..1192 | 8..864 | 4230 | 99.7 | Plus |
| CG33096-RF | 3465 | CG33096-RF | 218..1076 | 8..864 | 4230 | 99.7 | Plus |
| CG33096-RE | 1701 | CG33096-RE | 334..1192 | 8..864 | 4230 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25098005..25098469 | 8..472 | 2325 | 100 | Plus |
| 3R | 32079331 | 3R | 25098528..25098713 | 467..652 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 25098772..25098908 | 650..785 | 635 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25099194..25099276 | 783..864 | 350 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:59 has no hits.
FMO08051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:25 Download gff for
FMO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33096-RC | 241..1114 | 1..872 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:04 Download gff for
FMO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33096-RC | 211..1084 | 1..872 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:14 Download gff for
FMO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33096-RE | 327..1200 | 1..872 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:14 Download gff for
FMO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25097998..25098469 | 1..472 | 99 | -> | Plus |
| 3R | 25098534..25098713 | 473..652 | 100 | -> | Plus |
| 3R | 25098775..25098907 | 653..784 | 99 | -> | Plus |
| 3R | 25099196..25099277 | 785..865 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:04 Download gff for
FMO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20923720..20924191 | 1..472 | 99 | -> | Plus |
| arm_3R | 20924256..20924435 | 473..652 | 100 | -> | Plus |
| arm_3R | 20924497..20924629 | 653..784 | 99 | -> | Plus |
| arm_3R | 20924918..20924999 | 785..865 | 96 | -> | Plus |
