FMO08053.5prime Sequence
1123 bp (984 high quality bases) assembled on 2009-09-01
> FMO08053.5prime
CAGTCGACATGGTTTCGGAGGAGAACTGGAATAGCGACACGATGTCCGAC
TCGGACATGATCGACTCAAAGAACGACGTCTGTGGCGGAGCCTCCAGTTC
CAGCGGCAGCTCGATTTCGCCGAGGACACCACCGAACTGCGCCCGCTGCC
GCAATCATGGCCTAAAGATCACCCTAAAGGGACACAAGCGGTACTGCAAG
TTCCGCTACTGCACGTGCGAGAAGTGCCGACTGACGGCGGACCGCCAGCG
GGTGATGGCTCTGCAAACGGCCTTGAGGCGAGCCCAGGCGCAGGATGAGC
AGCGGGCGCTGCACATGCACGAGGTGCCGCCTGCCAATCCGGCGGCCACG
ACCCTCCTGAGTCATCACCATCATGTCGCAGCTCCCGCTCATGTCCACGC
CCACCATGTGCACGCCCATCACGCACACGGAGGACACCACTCGCATCACG
GACATGTCCTGCACCACCAGCAGGCAGCGGCGGCCGCAGCAGCAGCTCCG
TCGGCTCCAGCCTCCCATCTGGGTGGCTCCAGCACGGCCGCTTCCAGCAT
CCACGGTCACGCCCACGCGCACCACGTCCACATGGCAGCTGCTGCAGCCG
CCTCGGTGGCTCAGCACCAGCACCAAAGCCACCCACACTCGCACCACCAC
CACCACCAGAACCACCACCAGCATCCGCATCAGCAACCGGCCACGCAGAC
CGCCCTGCGATCTCCGCCGCACAGCGACCATGGTGGCAGTGTGGGTCCGG
CCACCAGCAGCTCCGGCGGTGGAGCACCCAGTTCCAGCAATGCGGCAGCG
GCCACCTCGAGCAACGGATCCAGCGGCGGTGGAGGAGGAGCGGAGGGGGC
AGCTCGGGTGGCGGGGCAGAAGTGGTAGGTCATCGGGAACAATCGGTGAT
CACTAGCGCCGATCACCACATGACCACGGTGCCTACGCCCGCCCAATCGC
TGGAGGGGTCCTGCGATTCGTCGTCGCCCTCGCCGTCGTCCCTTCCGGTG
CAGCAATTTGCCGATTCTCAGTTTCCGTCAATCAAAGACGGCGCCATGGT
GCCTTGGGCCCAGAACGTTTTCTAGACTATTGCCCAAAGCTATAAAATTC
CGCTATCCCTGGGAGCCTGATGC
FMO08053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-RF | 6941 | CG11094-RF | 1263..2386 | 8..1123 | 5150 | 97.9 | Plus |
| dsx-RE | 4010 | CG11094-RE | 1263..2386 | 8..1123 | 5150 | 97.9 | Plus |
| dsx-RD | 3621 | CG11094-RD | 874..1997 | 8..1123 | 5150 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7959779..7960806 | 1033..8 | 4825 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 23:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2384 | 612..689 | 174 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6889 | 585..689 | 162 | 64.8 | Plus |
FMO08053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:24 Download gff for
FMO08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RC | 874..1997 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:02 Download gff for
FMO08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RD | 874..1997 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:13 Download gff for
FMO08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RD | 874..1997 | 8..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:13 Download gff for
FMO08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7959752..7960806 | 8..1057 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:02 Download gff for
FMO08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3785474..3786528 | 8..1057 | 98 | | Minus |
