FMO08054.5prime Sequence
338 bp (338 high quality bases) assembled on 2009-09-01
> FMO08054.5prime
CAGTCGACATGGTGAACGTACCGAAACAACGCCGCACCTTCTGCAAGAAG
TGCAAGGTCCACAAGCTGCACAAGGTGACGCAGTACAAGAAGTCCAAGGA
GCGCAAGGGAGCTCAGGGCAGGCGTCGTTACGACAGGAAACAGCAGGGTT
TCGGAGGTCAGACCAAGCCCATCTTCAGGAAGAAGGCCAAGACCACCAAG
AAGATTGTGCTGCGTATGGAGTGCACCGAGTGCAAATACCGCAAGCAGAC
TCCCCTGAAGCGTTGCAAGCACTTCGAGCTGGGCGGTGACAAGAAGCGCA
AGGGACAGATGATCCAGTTCGCAAGCTTTCTAGACCAT
FMO08054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL36A-RB | 514 | CG7424-RB | 85..396 | 9..320 | 1560 | 100 | Plus |
| RpL36A-RA | 457 | CG7424-RA | 35..346 | 9..320 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8042439..8042614 | 186..11 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 8041991..8042127 | 320..184 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:29 has no hits.
FMO08054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:23 Download gff for
FMO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 24..348 | 1..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:02 Download gff for
FMO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 27..351 | 1..326 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:52 Download gff for
FMO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL36A-RA | 27..351 | 1..326 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:52 Download gff for
FMO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8041986..8042125 | 186..326 | 97 | <- | Minus |
| 2L | 8042440..8042618 | 4..185 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:02 Download gff for
FMO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8041986..8042125 | 186..326 | 97 | <- | Minus |
| arm_2L | 8042440..8042618 | 4..185 | 98 | | Minus |
