FMO08055.5prime Sequence
951 bp (951 high quality bases) assembled on 2009-09-01
> FMO08055.5prime
CAGTCGACATGGCGGCCAAGAGCGATATGGATATTCTGGCCAACTCCATG
TACGAGGACGATCCCAATGGCAACCTAGCGCCCGCCACCACCAAGGATAA
GGAATCAGTCAAGCCGGAGGAGCTGAAGGTCACCCCCGCTGGCACCAAAG
CAACATCCCCCCCCAACTCGGCGACCTTAGTTTCGACTTCTCCGCGATGG
GGTCCGCAGAATAAGGGCGCCCAGGAACTAGCCTTGTTGTACAGTCCAGG
AAAACGTGCCCAGGAAATCATTTGCGTCTACACCTGCATTGGCCTTATGA
TCATTAACCTAGCCCTGATTGTTAGACACTTGCGATTGGAGCGGATTAGT
GTCGCCTTTCTGTCCGCCCTGTGCGGCATTATAACGGCCGACTTTGCTTC
CGGCTTGGTTCACTGGGCGGCAGACACCTGGGGATCGGTGGACATACCGA
TGATTGGAAAGAACTTCCTGCGACCCTTTCGCGAGCATCATCTGGATCCC
ACATCCATAACGCGACACGATTTCATTGAGACAAATGGCGACAACTTTAT
GGTTGGCATACCAATTCTCGGCTACTTGGCCCACTATTTTTACATCAGGA
CGCCCAGCGAGATACAGCAACACTTCGGCTGGATAGCCTATGTGTTCCTC
TGCTCCATATTCGTGGCCATGACCAATCAGATACACAAGTGGTCGCATAC
CTATTGGGGATTGCCGAGGTGGGTCCTGTTACTCCAGAGCTGTCACATCA
TCCTGCCACGCAAGCATCATCGCATCCATCACGTGGCGCCACATGAGACC
TACTTTTGCATCACCACCGGGTGGCTTAACTGGCCACTGGAACGCATCAG
ATTCTGGTCAACATTCGAGCTCATCATCGAGCATTTTACGGCCTCAGCCC
CGCGATGACGACCTGAGTGGGCCAGAAACTCACAGCAGCTTTCTAGACCA
T
FMO08055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kua-RC | 1859 | CG10723-RC | 594..1523 | 9..934 | 4550 | 99.6 | Plus |
| Kua-RD | 1897 | CG10723-RD | 106..1035 | 9..934 | 4550 | 99.6 | Plus |
| Kua-RB | 1648 | CG10723-RB | 383..1312 | 9..934 | 4550 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20100947..20101188 | 9..250 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 20101910..20102130 | 460..680 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 20101628..20101842 | 247..461 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 20102193..20102364 | 679..850 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 20102424..20102493 | 849..916 | 250 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:19 has no hits.
FMO08055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:22 Download gff for
FMO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RA | 1..933 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:21 Download gff for
FMO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RB | 375..1319 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:35 Download gff for
FMO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kua-RB | 375..1319 | 1..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:35 Download gff for
FMO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20100941..20101187 | 1..249 | 98 | -> | Plus |
| 2L | 20101631..20101842 | 250..461 | 100 | -> | Plus |
| 2L | 20101912..20102130 | 462..680 | 100 | -> | Plus |
| 2L | 20102195..20102364 | 681..850 | 100 | -> | Plus |
| 2L | 20102426..20102520 | 851..943 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:21 Download gff for
FMO08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20101631..20101842 | 250..461 | 100 | -> | Plus |
| arm_2L | 20100941..20101187 | 1..249 | 98 | -> | Plus |
| arm_2L | 20101912..20102130 | 462..680 | 100 | -> | Plus |
| arm_2L | 20102195..20102364 | 681..850 | 100 | -> | Plus |
| arm_2L | 20102426..20102520 | 851..943 | 92 | | Plus |
