FMO08056.5prime Sequence
737 bp (737 high quality bases) assembled on 2009-09-01
> FMO08056.5prime
CAGTCGACATGGCTAATCCGTTTCGCTGGTGTCGAGTGTCGCACGACTGC
GTGTTCCAGATTAATGTGGTTCTGGTGGTGGTCGGAGTGATCTTTCTGCT
TGACGTGCTCAGCCACCTTTATCTGAAGGCGGTCATGTTTCCAGGCCTTC
GTCTATACCCGGTAGCCTTGCGCCCCTGGCTCTTTTGGGTGCGCGCTTTG
ACAATGGTTGCCTACATTTTGAACGCTGTTCTTGGGATTCACATGGCCCG
ACAACCCACCGTCTTGAAGTACGCTGGCTATATGCTCGTTGGAAGCGTGG
TGTTGCTGTACACAATAAGCATCGGAGTGACTCGCTTCATGTACCGCAAA
AGATTCGAGTTCTTTGCCGAGATGCTGGTGCTGCAGATGTGGGTGAGAGA
TAGACTTGGCAAGGTTGAAGTAGAGTTCGAGTGCTGCGGAAGGTCCAGCG
TAGTTGACTACCAGACAGCATCGAGCAACCGCACCTGGCCCATTGGCTCT
TGCTGCGGGAAGCAGAACTGCACCGGCTGCACTGCGAAGCTTAGCCAGTA
CCTGTGGACTATCGAGATGGATGTGGCAAGGGATAATATTATCGTATCCG
TTCTCTTGTTTGTGGCGATGATCGTCATGGTTTTACACTTTAAAGATGTG
CAATCGCTCGACGACACTAGTGATGTGGATGAGTCTTCAGAACTGGTAGA
CGACTCGGACGCCAAAGAAGCAAGCTTTCTAGACCAT
FMO08056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42A-RB | 1179 | CG14468-RB | 57..771 | 5..719 | 3560 | 99.9 | Plus |
| Tsp42A-RA | 936 | CG14468-RA | 57..771 | 5..719 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5795469..5796183 | 5..719 | 3560 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:54:49 has no hits.
FMO08056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:21 Download gff for
FMO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42A-RA | 1..714 | 9..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:04 Download gff for
FMO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42A-RA | 53..776 | 1..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:15 Download gff for
FMO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42A-RA | 53..776 | 1..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:15 Download gff for
FMO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5795465..5796188 | 1..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:04 Download gff for
FMO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1682970..1683693 | 1..725 | 99 | | Plus |
