FMO08066.5prime Sequence
1009 bp (982 high quality bases) assembled on 2009-09-01
> FMO08066.5prime
CAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGGCTGGGGAG
GAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCGCCCAGTGG
ACGCATTCGAGCCAGCTCCATCGAGATGCGTCTGCTGGAGATGCAGCGAA
AGTTGTCAGCCATTGCCGAAATACCGAAAATCCTGTGCTCCACTTTGGCC
ACCGTGTCGCAGAATTTTGGCCGAATGAGTGAATCGGAGGTGGATGAGGA
TGACGTCGGGGAGGAGGAGGCCTATGTGCAGCGGAAGTTCTCCTACGACG
AGGATGCCCTTGACTTTGAGCTGAGGAACGGGGAACAGGCAGGTGACACT
GACAGTGATGAGGAAGATTTGGTGTTGGTTCGGGAGGAGGATGCTGAGGA
CGTGGATGTACCGAAAGGTGCCAAGCAATCAAAGCTGCTGAAGGATGTCA
CGCCGGAATCGGATTATGCATCGGAAGCCAATTATCCGGCAAATGAGGCG
AGCGATGACACGGAATCCGACGATGAGGATGAGCCGGGCAGCACGGTATA
TTTCATGAAACTGCCAGCGGCCGCCGCCGAGGATACGTATTCTTCTACGG
AGGACGAGGATGACAGCGATTTCCTGAACACCACCTACACGTGGAATCTC
CGCAATGTGCCCAAGCTGCGAATTAACGATGCCGAGGCCGAAGGTGAACT
GACACTGGGACATCAGCGCGGGAGGTGCCTCAGCAGAGCAGCCACAGGAG
AAGCAGCCTTGTCTGGAACCGGAGCCACCGAAAGGTGCGCCCAGCCACGC
CCACACCGAAAGCTCCACCTCAAGAATCCGCCGAGGGCAGACACAAAGTT
GCTTTTCAGACTGGATAAACTGGAACGATCCTGGCCCTGGGCAGACCGCG
AGAGATCATATACAGCAATCCACTTGCCATTTGGTGCCACGAAAGCCACT
GGATTGGTGGACAGCGATGCAGCTGCTGCTGAAGACAAAAAGAGCAGCTT
TCTAGACAT
FMO08066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RF | 2046 | CG42319-RF | 250..1244 | 7..992 | 4675 | 98.7 | Plus |
| CG42319-RE | 2682 | CG17042-RA | 886..1880 | 7..992 | 4675 | 98.7 | Plus |
| CG42319-RD | 1466 | CG42319-RD | 886..978 | 7..99 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13264369..13265119 | 99..847 | 3545 | 99.3 | Plus |
| 2R | 25286936 | 2R | 13262906..13262998 | 8..100 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 13265319..13265387 | 847..914 | 280 | 97.1 | Plus |
| 2R | 25286936 | 2R | 13265453..13265525 | 915..984 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:28 has no hits.
FMO08066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:13 Download gff for
FMO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RF | 217..1218 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:59 Download gff for
FMO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 882..1883 | 1..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:19 Download gff for
FMO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 882..1883 | 1..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:19 Download gff for
FMO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13262900..13262997 | 1..99 | 95 | -> | Plus |
| 2R | 13264370..13265121 | 100..848 | 99 | -> | Plus |
| 2R | 13265321..13265388 | 849..914 | 95 | -> | Plus |
| 2R | 13265453..13265537 | 915..997 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:59 Download gff for
FMO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9150405..9150502 | 1..99 | 95 | -> | Plus |
| arm_2R | 9151875..9152626 | 100..848 | 99 | -> | Plus |
| arm_2R | 9152826..9152893 | 849..914 | 95 | -> | Plus |
| arm_2R | 9152958..9153042 | 915..997 | 93 | | Plus |
