FMO08067.5prime Sequence
839 bp (839 high quality bases) assembled on 2009-09-01
> FMO08067.5prime
CAGTCGACATGCTCCTAATTGGATTACTAATGCTACTCCATGCCGGCCTC
CAAGGAGCCCAGTGTGTTGCCTTCTACACGGAAAAACCCTCCTATATTGA
GTCCTGCAAGATTTATGAACCGGAGTTCACCAAGTGCTCAACTCGTTCAA
TACAGGCATTTATGAACCAGCTCGTCAAAGGTGTGCCCGAAATAGAGGAA
TCCTTTGGACCCATCGATCCCATGAGGCAGGAACAGCTGGTGTTCAAGCA
GGATAACAGCGACGTGGCCACCCTTTCCGCCAATCTTACGGATATGCTGA
TCAGGGGCTTTGGCAAAATGCTGATCAAGGAGAGCAAAGTCAGCAAAAAG
GATTTCAGCTGGCTAACTAAGATCTACCTGCCCCAAATGCGAATAGATGG
TCACTACAAAATGGTCGGTCGCATTTTGCTCGTGCCTCTGCAGGGAAATG
GAAAAATAGTCATGGAAATAGATGATCTGGACATACTGATGACCACCAAA
ACACGCCTCTACGAGAAGGGCGGCTATACATTTTACAACGTGACATCCGT
GAAGGTAAAAGTGGACGTCGGCAAAGTTCGCACCAGATTGGATAACCTCT
TCAACGGGCACAGCAAGGAGGTGGAAGATAGCACCAATCAGTTCTTTAAC
GACAATTGGAAGGATGTCTTCGAGGCACTGCGTCCGCTGGTGGTTGAAAC
CGTGGAAAGAACGCTACTAGATCTACTCCACAAGACATTTGCCCTGTTTC
CCGGCCAGCTTCTTTGTGGAGGACATACCCACCTCCTTAACCTTGTATGG
TCGCAAGTCACACATGATCACTGCAGCTTTCTAGACCAT
FMO08067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17189-RA | 995 | CG17189-RA | 71..884 | 8..822 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27102455..27102806 | 470..822 | 1715 | 99.7 | Plus |
| 3R | 32079331 | 3R | 27101823..27101981 | 179..337 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 27102263..27102396 | 338..471 | 655 | 99.3 | Plus |
| 3R | 32079331 | 3R | 27101673..27101768 | 88..183 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 27101476..27101555 | 8..87 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:42 has no hits.
FMO08067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:12 Download gff for
FMO08067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 1..795 | 30..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:07 Download gff for
FMO08067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 63..884 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:30 Download gff for
FMO08067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 63..884 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:30 Download gff for
FMO08067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27101825..27101981 | 181..337 | 100 | -> | Plus |
| 3R | 27102263..27102396 | 338..471 | 99 | -> | Plus |
| 3R | 27102457..27102806 | 472..822 | 99 | | Plus |
| 3R | 27101468..27101555 | 1..87 | 95 | -> | Plus |
| 3R | 27101673..27101765 | 88..180 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:07 Download gff for
FMO08067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22927190..22927277 | 1..87 | 95 | -> | Plus |
| arm_3R | 22927395..22927487 | 88..180 | 100 | -> | Plus |
| arm_3R | 22927547..22927703 | 181..337 | 100 | -> | Plus |
| arm_3R | 22927985..22928118 | 338..471 | 99 | -> | Plus |
| arm_3R | 22928179..22928528 | 472..822 | 99 | | Plus |
