FMO08069.5prime Sequence
997 bp (978 high quality bases) assembled on 2009-09-01
> FMO08069.5prime
CAGTCGACATGAGCAGATTTGTTTATAAACTTTTACAGAGTGCAAACCAA
ACTAGTTCGGGCTGCAGACGCATTTCTTTGGCTACTGTAAGAAATGCGGA
AAGCGAATCTCAAGAGGGTGCCCCTGCCCGCACAGTTCTGGTGGAGAAGG
ACTCGCACATAACACTTATTGGCCTAAATCGCGAGCAGCAGCGTAATTCC
ATTGATGCCAACACCGCGGAGCAGCTGACCGAAGCCATTAGCCAATTCGA
AGCGGATGATACTTCTCCAGTGGGTGTGCTCTACGGCATAGGTGGCTCCT
TTTGTGCAGGCTATGATCTGGAGGAGCTAGAGGCGGAGGCGCAACGCGGC
AGCCTCAACTTTCTGTTGCGTCACGAGGGCTCCGTCGGACCAACTAGGCG
GCATCTCCGCAAGCCACTTGTTTGCGGCATCAGCGGTTTCTGTGTGGCCG
GTGGATTGGAACTGGCTCTAATGTGCGATCTCCGGGTGATGGAGGACACT
GCAGTTCTGGGGTTCTTCAACCGTCGCCTTGGAGTTCCCCTGAGCGATGG
TGGAACTGTGCGGCTGGCCGCTGCAGTGGGTTACTCCAATGCCTTGGAGA
TCATCGCAACTGGAAGACGCATCTACTCTGGGGAGGCGCGGCGAATCGGT
TTAGTGAATCGCGTTGTGGCCACAGGCACAGCTTTAGGTCAAGCTGTTAA
TCTGGCCTTTTCCATTGCCAAGTTCCCCATGGCTTCCCTAATGCACGACA
GGAATGCTGTGCTTGAAAATGCCAATGCCTACAACAACCCAGGATTCCAT
GTGGCCAGTTACAATGAGATCATGAATGTTACCTCAGATATGATAACAGA
TATGCAGGAGGCGTGAAGCGTTTCAAGAACTCTGAATAATGGCCCCAAAA
CCGATTCGTGAGCATAAAGGAAGAATACCATTCCAGATTGGGAAAGGCCG
AAATCGAGATCGAAAAACAAAGCCAAAGAAAGCAGCTTTCTAGACCA
FMO08069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5611-RC | 1375 | CG5611-RC | 22..997 | 9..979 | 4650 | 98.9 | Plus |
| CG5611-RA | 1096 | CG5611-RA | 22..997 | 9..979 | 4650 | 98.9 | Plus |
| CG5844-RA | 1355 | CG5844-RA | 554..632 | 457..535 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27635162..27636039 | 885..9 | 4310 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27635012..27635093 | 971..891 | 250 | 95.2 | Minus |
| 3R | 32079331 | 3R | 12434783..12434861 | 457..535 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:32 has no hits.
FMO08069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:11 Download gff for
FMO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..997 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:25 Download gff for
FMO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..997 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:34 Download gff for
FMO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 15..997 | 1..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:34 Download gff for
FMO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27635003..27635093 | 891..979 | 93 | <- | Minus |
| 3R | 27635157..27636046 | 1..890 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:25 Download gff for
FMO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23460725..23460815 | 891..979 | 93 | <- | Minus |
| arm_3R | 23460879..23461768 | 1..890 | 99 | | Minus |
