FMO08075.5prime Sequence
677 bp (677 high quality bases) assembled on 2009-09-01
> FMO08075.5prime
CAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACA
ATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCCATTGCCTA
TCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGGCAACGTGA
CCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCGTCCAGCTG
GAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAGAAGGGAGA
TCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCCCGATAAGG
TTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCGATCTGGGC
AACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATACACGGATCA
GGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGGAGTTGTTG
TCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGGATTCCAAG
AAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATTGGCATCAA
CTCGGATGTGGACGAGTGGCCATGTCGCGATGGTGGCGCCGGCGCCCTGC
GCTACTCCTTCTCCATCCTGACCGTCATCGTGGCCCTCATCATGGCCCGC
AGCCTTGACGCAAGCTTTCTAGACCAT
FMO08075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod3-RD | 1095 | CG9027-RD | 107..757 | 9..659 | 3255 | 100 | Plus |
| Sod3-RE | 1228 | CG9027-RE | 107..648 | 9..550 | 2710 | 100 | Plus |
| Sod3-RA | 896 | CG9027-RA | 107..648 | 9..550 | 2710 | 100 | Plus |
| Sod3-RE | 1228 | CG9027-RE | 884..992 | 551..659 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11381949..11382183 | 305..71 | 1160 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11381663..11381893 | 528..298 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 11380685..11380793 | 659..551 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 11382249..11382311 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2346..2418 | 559..629 | 126 | 65.8 | Plus |
FMO08075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:05 Download gff for
FMO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9027-RD | 91..754 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:15 Download gff for
FMO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RD | 97..760 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:20 Download gff for
FMO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RD | 97..760 | 1..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:20 Download gff for
FMO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11380682..11380793 | 551..663 | 98 | <- | Minus |
| 2R | 11381573..11381594 | 529..550 | 100 | <- | Minus |
| 2R | 11381663..11381891 | 300..528 | 100 | <- | Minus |
| 2R | 11381955..11382182 | 72..299 | 100 | <- | Minus |
| 2R | 11382249..11382320 | 1..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:15 Download gff for
FMO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7269460..7269687 | 72..299 | 100 | <- | Minus |
| arm_2R | 7269754..7269825 | 1..71 | 95 | | Minus |
| arm_2R | 7268187..7268298 | 551..663 | 98 | <- | Minus |
| arm_2R | 7269078..7269099 | 529..550 | 100 | <- | Minus |
| arm_2R | 7269168..7269396 | 300..528 | 100 | <- | Minus |
