FMO08076.5prime Sequence
839 bp (839 high quality bases) assembled on 2009-09-01
> FMO08076.5prime
CAGTCGACATGCAGCAACAGGATCAGCACCTGGACAAAAACAAGCAGAAG
CGCCACCGCACCCGCTTCACGCCCGCCCAGTTGAACGAGCTGGAGCGCTG
CTTCTCGAAGACGCACTATCCGGACATCTTCATGCGCGAGGAGATCGCCA
TGCGGATTGGCCTCACTGAGTCCCGCGTTCAGGTCTGGTTCCAGAACCGC
CGTGCCAAGTGGAAGAAGCGCAAGAAGACAACCAATGTCTTCCGCACCCC
GGGCGCCCTGCTGCCCTCCCATGGACTTCCGCCGTTTGGGGCCAATATAA
CCAATATCGCCATGGGCGATGGTCTCTGTGGCACGGGAATGTTTGGCGGA
GATCGCTGGAGCGTGGGTGTCAATCCAATGACGGCAGGCGACTCCATGAT
GTACCAGCACAGTGTGGGCGGAGTCAGTTGTGGGCCCAGTGGTTCGCCGA
GCGCCACCACCCCGCCGAACATGAACAGCTGCTCCTCGGTGACCCCGCCG
CCACTTTCCGCGCAGCCGAACTCCAGCCAAAACGAGCTGAACGGCGAGCC
CATGCCGCTGCACCAGCAGCAACAACAACAGACTCACCAACATCAGCAAC
AGCAAACTCACCAACACCACCCGATGGCGCCACCAACACCCACACAGCAA
CAGCAGCAGCTTCCGCAGTCTATGCAGTCGCCGTCAGATGGCGCCAACGA
CACACTCCACAGCATCGCAGCGCTGCGGCGGCGGGCGTCCGAACTAAATG
CGATTCCTTCCTACCTACAGATGGCGCCACACAACTACGAACACTACAAT
TCGAATTCCAATTCGGTCTACGCAAGCTTTCTAGACCAT
FMO08076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otp-RJ | 2856 | CG10036-RJ | 1173..1986 | 8..821 | 4070 | 100 | Plus |
otp-RC | 2347 | CG10036-RC | 664..1477 | 8..821 | 4070 | 100 | Plus |
otp-RI | 2835 | CG10036-RI | 1189..1965 | 45..821 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20884495..20884762 | 821..554 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 20886522..20886730 | 388..180 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 20885202..20885372 | 554..384 | 855 | 100 | Minus |
2R | 25286936 | 2R | 20895709..20895869 | 184..24 | 805 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6878 | 562..716 | 244 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2484 | 540..721 | 240 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2511 | 540..729 | 235 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6913 | 513..683 | 230 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6858 | 530..667 | 229 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6934 | 512..679 | 224 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6835 | 555..668 | 209 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2535 | 555..721 | 206 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..3026 | 468..683 | 192 | 58.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 571..660 | 191 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 573..660 | 189 | 73 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1051..1164 | 546..661 | 187 | 66.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2511 | 512..660 | 183 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6814 | 572..668 | 178 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6992 | 512..716 | 178 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2889 | 545..716 | 175 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2902 | 523..714 | 173 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2709..2979 | 467..721 | 171 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2534 | 524..623 | 166 | 66 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1165 | 504..614 | 159 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1612 | 508..621 | 157 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2539 | 558..644 | 153 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2977 | 513..667 | 152 | 58.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8018 | 542..618 | 148 | 67.5 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..577 | 553..619 | 148 | 71.6 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9387..9462 | 542..618 | 148 | 67.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1151 | 535..621 | 146 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2665 | 589..658 | 142 | 70.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3342 | 524..634 | 141 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 567..646 | 138 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6923 | 510..603 | 136 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1600 | 564..620 | 127 | 72.6 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..195 | 558..604 | 127 | 74.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9225 | 558..604 | 127 | 74.5 | Plus |
BS | 5142 | BS BS 5142bp | 2012..2066 | 564..621 | 121 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6570 | 579..622 | 114 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2685 | 560..612 | 112 | 67.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3336 | 555..603 | 110 | 69.4 | Plus |
FMO08076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:04 Download gff for
FMO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otp-RC | 657..1484 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:24 Download gff for
FMO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otp-RC | 658..1485 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:37 Download gff for
FMO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otp-RC | 658..1485 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:37 Download gff for
FMO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20884487..20884761 | 555..830 | 98 | <- | Minus |
2R | 20885202..20885368 | 388..554 | 100 | <- | Minus |
2R | 20886523..20886727 | 183..387 | 100 | <- | Minus |
2R | 20895711..20895866 | 27..182 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:24 Download gff for
FMO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16771992..16772266 | 555..830 | 98 | <- | Minus |
arm_2R | 16772707..16772873 | 388..554 | 100 | <- | Minus |
arm_2R | 16774028..16774232 | 183..387 | 100 | <- | Minus |
arm_2R | 16783216..16783371 | 27..182 | 100 | <- | Minus |