FMO08078.5prime Sequence
893 bp (217 high quality bases) assembled on 2009-09-01
> FMO08078.5prime
CAGTCGACATGCTGTTGATGCCCACATCCTGTGGGCCGGGTCCACCCAAC
GACCACGGCCCCATGTCCTTGCCCACTTCCTCCCCCTCCTGCTCCAAACG
CGCCCGCATACCCACGCGAGCGGCAGATGATGATGAGCCGTTGCGGCGGT
CAGGGACCCTAACCCAAAGGCAAAGTTCGGGGTCGGGCATTCCCCAATGG
CTGCTAATCCTCATCGGACTCCTCGCCATTCTCGCCCAGACACCAGGCAG
CCAGGTGGCCGCCGAGAAGAGTAAACCCTATTACTTGCAGTCGCTGTGCA
AGAACCACTTCCTCCAGCAGCTGTACCGAAAGATCGATGGAGCGGTGCTC
TGGTCACAGAACGAGCGGAATCTGGACTGCATTATCACCTTCCAGACGCA
CTCGGTGCTGCAGCGCTTCATGCTCCGCTTCGACATGCTGCAGTTGGACT
GCAACGATCACCTGCTGGTTTACGATGGCGCCCACGCCGTCGCCACGCCC
AATATTGACATCTCCTGTCGGAACCAAAGAACACCGTCAACGCGCTCCTG
ACGCGCACGAACTTTGTGACACTGAATTACGTGACCGATGGCTGGGGAAC
GGATGCGAACGGCTTCAAGCTGGGTGATTACGGTCCGTGAAGGATCCCAA
AGCACACCTGTAAGGACTTCCACCCTGCGCCACCGCGAGTTCTGCATCCA
TCCCGATCTCCTCTGCGATGGCATCAACCACTGCCGCTACAACTCCGACT
AATTCGTGCACAATCTGTGCCAGATGAGACGAGCAGCACGGTTTTGGCCC
TGAACATGAACTGGTTCGTTCCTCCTGTCTTCGGTGTGCTGCTCACCTGA
GCGCGCTCAATCGTGGACAGTGCCCATTGGAGTGTGCGGGCAA
FMO08078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6024-RF | 4932 | CG6024-RF | 408..1287 | 9..891 | 3785 | 96.1 | Plus |
| CG6024-RC | 3123 | CG6024-RC | 546..1425 | 9..891 | 3785 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11759629..11759896 | 276..9 | 1340 | 100 | Minus |
| 3L | 28110227 | 3L | 11743807..11744029 | 502..280 | 1100 | 99.6 | Minus |
| 3L | 28110227 | 3L | 11737785..11737929 | 649..504 | 555 | 96.6 | Minus |
| 3L | 28110227 | 3L | 11737586..11737708 | 774..651 | 405 | 92 | Minus |
| 3L | 28110227 | 3L | 11737421..11737510 | 859..771 | 235 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:09 has no hits.
FMO08078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:03 Download gff for
FMO08078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RE | 400..1287 | 1..891 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:16 Download gff for
FMO08078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 538..1425 | 1..891 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:30 Download gff for
FMO08078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 538..1425 | 1..891 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:30 Download gff for
FMO08078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11759626..11759901 | 1..279 | 98 | | Minus |
| 3L | 11737785..11737929 | 504..649 | 96 | <- | Minus |
| 3L | 11743806..11744029 | 280..503 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:16 Download gff for
FMO08078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11730885..11731029 | 504..649 | 96 | <- | Minus |
| arm_3L | 11736906..11737129 | 280..503 | 99 | <- | Minus |
| arm_3L | 11752726..11753001 | 1..279 | 98 | | Minus |
