FMO08079.5prime Sequence
961 bp (961 high quality bases) assembled on 2009-09-01
> FMO08079.5prime
CAGTCGACATGAATCTGTTAGACTTGCCACAAACACTAATTCAGGACATT
TTGGAGTTGCTCCCCTACGACGAGGTGGCAAAAAAACGAGAGGTGTGCAC
TCTATTTAATTATCTTGGGCAGCAAATATTAAACAAGGGTTTTAACAAGA
TCATTATGGCCCATGCCAAGAACTTCAAGCGCATCAAATCCATGCTGCCA
CGACGGGAATCGGAACGCAGGAACCACATTCTATCCCGCCACTCGGACAT
ACTTACCTCGATCGAAACACGGATCTCGATGCTGACCATGACGTACTCCA
AGTTTATTGACCTCAACATCTGCTGTTTCATACCTGGTCGCGTTCTGGAC
GAGATCAACAGCATCCTGCGCATTTTGAGCACCTCCACTAAACAGCTGCG
ACCACATGAAGTGCTGCAGGAGCTGCGCGACATCTCCTCCATGGCCATTG
AGCATTTCGACGAAAAGATTGCTGTGAATTTCAAATTGGAACACCGAAAA
CAATTGGCGGAATCCACGGCGGCCGGAGCTCGACTTGTGGTTTGCAGTGC
CTTGGGCGACATAAGCTTTAGTGGCGTAAGGCGAACCGGAATCAGTCGTC
CCGTAGATCATGGGCTCGTCCAGCAGGCTATCGTTCAGTTGGCCCCCATA
TCTGCCAGCAAATCACACTCTGATTCCTCTCAAAAGGATCGCATGTCTAA
ACAACTGTTCAAGCAATACCAGCTCCAAAGGTCACTTTCGCAAAAGATTC
GCCTCTTGGAAGTGTCGCGCAAGGTGCACGATCGCCGATTGCAAGAAGCC
CTATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTTAAGCGCCA
AATGGAAGGATGTGGTGGCCCATATGCCCAGTTGCGCTGTTAACGTCAGC
TGTCGCCAGCGCGACTGCTTACCACGGCCCTGAAAAACCCAAGTTGCAGC
TTTCTAGACAT
FMO08079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 1206 | CG3428-RA | 87..1032 | 9..950 | 4510 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9486636..9487358 | 937..218 | 3325 | 98.9 | Minus |
| 3L | 28110227 | 3L | 9487424..9487554 | 221..91 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 9487618..9487704 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:04 has no hits.
FMO08079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:02 Download gff for
FMO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 58..1009 | 2..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:52 Download gff for
FMO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 81..1032 | 2..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:54 Download gff for
FMO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 81..1032 | 2..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:54 Download gff for
FMO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9487621..9487710 | 2..92 | 95 | | Minus |
| 3L | 9486622..9487355 | 221..950 | 98 | <- | Minus |
| 3L | 9487425..9487552 | 93..220 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:52 Download gff for
FMO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9480721..9480810 | 2..92 | 95 | | Minus |
| arm_3L | 9479722..9480455 | 221..950 | 98 | <- | Minus |
| arm_3L | 9480525..9480652 | 93..220 | 100 | <- | Minus |
