FMO08080.5prime Sequence
371 bp (371 high quality bases) assembled on 2009-09-01
> FMO08080.5prime
CAGTCGACATGATAATGCTAATGACTCCGATGACGATGCAGAAATGGAGA
ATGACAAATCAGTACAACCCCAGGATGAATACAATTCATAGTTGCGGTTG
TATGGGCGTGCGCACCTGCTTGAGCTGCGAACAGGACTTTCAGGTAGCAA
AGAGCTGCCTCGGCGAATCAGTGCTCTCTTTGATGCCCTACGAAGTTCAA
CAACCGGGCAAGTACAACTTGGACTTGGTGGCCAGCTACGAAGATGAACT
ATTGGCGCCTCTACTGACAGATGACCAATTTGCAACTTTTGAGGAAATGG
TGCTGCGCATACCTTTGCCAAACCTCTGCCTAATAGTTTTGTATGGACCA
GGGGCAAGCTTTCTAGACCAT
FMO08080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 579..775 | 155..351 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 631..827 | 155..351 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 70..152 | 71..153 | 295 | 90.4 | Plus |
| CG4036-RB | 950 | CG4036-RB | 20..100 | 73..153 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9789367..9789617 | 322..72 | 1255 | 100 | Minus |
| 2L | 23513712 | 2L | 9791527..9791694 | 155..322 | 705 | 94.6 | Plus |
| 2L | 23513712 | 2L | 9790966..9791048 | 71..153 | 295 | 90.4 | Plus |
| 2L | 23513712 | 2L | 9789790..9789838 | 74..26 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:31 has no hits.
FMO08080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:01 Download gff for
FMO08080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18854-RC | 608..942 | 32..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:56 Download gff for
FMO08080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 156..351 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:09 Download gff for
FMO08080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 156..351 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:09 Download gff for
FMO08080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9789367..9789615 | 74..322 | 100 | <- | Minus |
| 2L | 9789791..9789832 | 32..73 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:56 Download gff for
FMO08080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9789367..9789615 | 74..322 | 100 | <- | Minus |
| arm_2L | 9789791..9789832 | 32..73 | 100 | <- | Minus |
