FMO08081.5prime Sequence
965 bp (869 high quality bases) assembled on 2009-09-01
> FMO08081.5prime
CAGTCGACATGGCCACAACCTGCATGCCGCATTTCACGGAATATTTTCAA
ACCACCACCCAGTCAGAGTTAACAACAAATGAAAGTGCCAACAGCAGAAG
CAGCAGCAGCAGCAGTGGCTGTAGAGAACCGTCCAAAACCAGTGGCTTCT
TCTACAGCGCCAGCACACATTACCAGAGCAAAGTGCAGCAGCTAATCAGC
TTCAGCTTCACCTCATCGTTCCACCTGCTCTTCATCACCTGCATACTGAG
CATCAGCAAATTCTGCAATGCGGCGGCGGTAAATGCCGCCCATGTGACCG
CTGCCACGCCCACTGCCAGCGAGATAATGCACAATCTGAGCGGATCGGCG
CTGCTAGAGCGTCTGAAAGCCAGTACTCTGGGACCCACCCTCGATCAGCT
GAAGCATCTGGCTCCTGCGGCAGCCAACAGCATTAGTCCTGGTACAGGAT
CTGGCATGGGAATCGGGATGGGACACTTTGGCAGTTCCATTAATTCGGTG
CTAAACGGAAATCCTTTAAAGTTCTTGAATGTGTCAGGAAAAATCGGCAC
TCCTTTGGACATATCTCTCGGTCTGAGCAACTACTGCGATGAGAAGCAGT
TCCAGTGCTCCACCGGCGAATGTATCCCCCATACGGTTCGTGTGCGATGG
CTCCTCGGATTGCCCGGACCACAGTGATGAGCGGCTGGAGGAGTGCAAGT
TTACAGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAAG
TGCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCGCCGATGG
AAGCGATGAATCGACGTCCCACTGCCTTGAAACAAAACTGGAAAACAACC
GCACAGACTCATCTTAACAAGGCCACAAATCTGATGCGAATCAAGATAAT
GATTACCTTCCAAATACCCTGCATGTGATTGCCAGTTTAGCGGGCACATC
TTTTAGAAACAAGCC
FMO08081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RD | 2634 | CG31092-RD | 234..1177 | 9..953 | 4400 | 98.2 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 234..1050 | 9..826 | 4050 | 99.8 | Plus |
| LpR2-RE | 4189 | CG31092-RE | 234..1050 | 9..826 | 4050 | 99.8 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 3100..3226 | 827..953 | 350 | 88.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25739055..25739610 | 564..9 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 25722416..25722556 | 706..565 | 660 | 99.3 | Minus |
| 3R | 32079331 | 3R | 25713842..25713964 | 826..704 | 600 | 99.2 | Minus |
| 3R | 32079331 | 3R | 25701535..25701661 | 953..827 | 275 | 81.1 | Minus |
| 3R | 32079331 | 3R | 25754348..25754465 | 703..585 | 200 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:11 has no hits.
FMO08081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:00 Download gff for
FMO08081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1187 | 9..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:10 Download gff for
FMO08081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1187 | 9..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:34 Download gff for
FMO08081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1187 | 9..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:34 Download gff for
FMO08081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25713842..25713961 | 707..826 | 99 | <- | Minus |
| 3R | 25722416..25722556 | 565..706 | 99 | <- | Minus |
| 3R | 25739055..25739610 | 9..564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:10 Download gff for
FMO08081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21539564..21539683 | 707..826 | 99 | <- | Minus |
| arm_3R | 21548138..21548278 | 565..706 | 99 | <- | Minus |
| arm_3R | 21564777..21565332 | 9..564 | 100 | | Minus |
