FMO08084.5prime Sequence
956 bp (956 high quality bases) assembled on 2009-09-01
> FMO08084.5prime
CAGTCGACATGAATCGGGTTCAGGTCACGCCGCGGAGCTATCCCACGAAC
CTTATCGATAAGGACTGGGGAAATCGAAAGCTTTTTTATACGAAAGATTC
GGAGAACTTTCTTCGCTTAGTCCACGATATGAAGCTCAGGGATGACGATG
TCTGGATCGTAACTCTACCGAAATGCGGAACCACTTGGATGCAGGAACTG
CTCTGGTTGCTCCTCAACAACTGCGATTTCGAGGGGGCGTTGGCCAAGGA
TCAGGAGCTGCGAACTCCGTTTCTCGAGTTCGGTTACTCCGTTTTTCACG
ACCCGAACCGCTCATTCGGGCCTATCGAGGACCTGAAGTCCCCGCGACTG
ATAAAATCCCACCTTTCGCTTGCCCTCCTCCCATCAAAACTTTGGGAGGG
AAAAAACAAAGTGATCTATGTGTCCCGTAACCCCCTGGACTCCTATGTCT
CCCGATATTATCACGGAGTATCTTTTGGTTTCAATTACGGGAAGTCACTG
CACCAGTACTTCGATGAGGTGCTGGCCTCTGATGATTTCCCCACGGAGTT
CATTGAACACGCCCACGAGTTCTACCAACTGAGGAACGAGCCTTGGGTAT
TCTACACCAGCTTTGAAATGATGAAGAAAGATCTGCGAGGAGTGATCAAC
GATGTCTCCAGATTTCTGAATAAACCCATCAACGATCAGCAAATGGAGAA
ACTGCTAAAGCATTTGTCCTTCGCGGAATGAAGAAAAATCCCACCACGAA
TCATCTGTGGGAGTTGGCCCAAGTTCAACACGAAATGCTGGGAAAGAAAT
GCACCCATTCGTGAGACGTGGGGATGTCAATGGCTACAGGACGATTGAAG
CCCGAACAAATTGAGAAGGCCATTGTCCGGATACAGAGGTTCTTGCGAAG
ACCGTGTGACTTTGACGACTACTGCTCCTGAAAGATCAGCCAGCTTTCTA
GACCAT
FMO08084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-RC | 2062 | CG44167-RC | 21..959 | 9..939 | 4465 | 98.9 | Plus |
| St3-RB | 1101 | CG44167-RB | 21..959 | 9..939 | 4465 | 98.9 | Plus |
| St3-RA | 1121 | CG44167-RA | 21..958 | 9..938 | 4460 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23683729..23684179 | 278..728 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 23683397..23683667 | 9..279 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 23684374..23684512 | 807..939 | 365 | 94.2 | Plus |
| 2R | 25286936 | 2R | 23684248..23684320 | 735..806 | 315 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:48 has no hits.
FMO08084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:08 Download gff for
FMO08084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5431-RB | 9..959 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:03 Download gff for
FMO08084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RB | 13..963 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:17 Download gff for
FMO08084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RB | 13..963 | 1..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:17 Download gff for
FMO08084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23684374..23684516 | 807..943 | 93 | | Plus |
| 2R | 23683389..23683665 | 1..277 | 98 | -> | Plus |
| 2R | 23683729..23684186 | 278..734 | 99 | -> | Plus |
| 2R | 23684248..23684320 | 735..806 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:03 Download gff for
FMO08084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19570912..19571188 | 1..277 | 98 | -> | Plus |
| arm_2R | 19571252..19571709 | 278..734 | 99 | -> | Plus |
| arm_2R | 19571771..19571843 | 735..806 | 98 | -> | Plus |
| arm_2R | 19571897..19572039 | 807..943 | 93 | | Plus |
