FMO08085.5prime Sequence
1140 bp (993 high quality bases) assembled on 2009-09-01
> FMO08085.5prime
CAGTCGACATGAAAATTCTTTCAAAAAAACGTCTCCTGCGTCAAGCTGGT
CTTATGCGGCGAGGACCTCGGAAAGCAACATCACCTCTAGATCGAGTTTA
CAGAGAAATAGCAGTTTTAAAGAAACTTGATCATCCAAACGTCGTAAAGT
TGGTAGAAGTGCTGGATGACCCACTTGAAGATTCATTATATATGGTTTTT
GAATTGGTAAAACAAGGTGAAGTTCTTAGGATTCCAACAGATAATCCCTT
GTCTGAAAAAAGGGCTTGGAGTATATTTCGGGAGTCTTTACTTGGATTGG
AATATTTGCATCATCAAAAAATTATCCATGCCGACATTAAGCCTGGAAAT
TTATTATTAACTGAATTTGGACATGTAAAAATAGCTGATCTTGGCGTATG
CAATGAGTTCCTTGGAGATGATGCAACAATAAGTAATGGATCAACGGCTG
GAACTCCAGCTTTCAGGGCTCCTGAAACTCTTATCCCTGGACAGAACGAA
TATTGTGGCAGGGCGGCAGATGTCTGGGCCTTAGGCGCTACTCTATATTC
CTTAATATTCGGAAATGTGCCGTTTCTAGCTGATTCAGTACCCTTACTGT
ATGAAAAAATTAAACAAGATTCTGTCAAATTTCCAGAAAACCACAAAGTA
ACTGAAAATTTAAAAAGTTGCATAGTTCAAATGTTGGAAAAGAATCCGAC
GCAGAGAATTACTATTCCCCAGTTAAAGACTAGTAAATGGGTAACTTCTG
ATGGGGACTATCCCTTTGCCGACCGAAGAAGAAAATTGTTGCTTGGTACA
AGTAGACGACGAAGATATAGACTCCGTCGTGCGCAGCATTCCTAAATTGG
ACACACTTATATTAATTAAAAACATGTTAAAAAAGCCTTCATTTGGCAAC
CCGTTTGTAAAAGGATGTTCTGGAACATCATCATCGCTCGCGGGCTGCTC
GAGGATTGAAGGTTCATACGCGCAGGTCGATCTATTCAGCACCTGGTTCA
TATCATATGTCACAGCCAGACAGCTTCGTCGGATACTTCTCCTGCCATCA
CTATGAAACATGCTCCTACTCAATGTAATGAGGAACTCCACTTTGAATAT
GCAGCTTTCTCTGAACATTCGTTTGGGCGCGCGGGGCCAG
FMO08085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RD | 2506 | CG17698-RD | 1207..2290 | 9..1088 | 5110 | 98.6 | Plus |
| CG17698-RA | 1582 | CG17698-RA | 283..1366 | 9..1088 | 5110 | 98.6 | Plus |
| CG17698-RF | 2560 | CG17698-RF | 1559..2344 | 307..1088 | 3620 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23746247..23746544 | 9..306 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 23748422..23748708 | 727..1012 | 1230 | 97.6 | Plus |
| 3L | 28110227 | 3L | 23748138..23748373 | 493..728 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 23747873..23748060 | 307..494 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:46 has no hits.
FMO08085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:53 Download gff for
FMO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RB | 1209..2292 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:11 Download gff for
FMO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RA | 283..1366 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:14 Download gff for
FMO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RA | 283..1366 | 9..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:14 Download gff for
FMO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23746247..23746544 | 9..306 | 100 | -> | Plus |
| 3L | 23747873..23748060 | 307..494 | 100 | -> | Plus |
| 3L | 23748140..23748373 | 495..728 | 100 | -> | Plus |
| 3L | 23748424..23748716 | 729..1019 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:11 Download gff for
FMO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23739347..23739644 | 9..306 | 100 | -> | Plus |
| arm_3L | 23740973..23741160 | 307..494 | 100 | -> | Plus |
| arm_3L | 23741240..23741473 | 495..728 | 100 | -> | Plus |
| arm_3L | 23741524..23741816 | 729..1019 | 97 | -> | Plus |
