FMO08087.5prime Sequence
730 bp (730 high quality bases) assembled on 2009-09-01
> FMO08087.5prime
CAGTCGACATGGCATCCGGCGGCTTAACATGTGTAAAATACTTGACATTC
TTTTGCAATCTTCTTTTTGCGCTCACTGGGCTTCTTATTTTTCTGGTGGG
AGGCATGGTCCAACTAAACTATGCACATTATTCGAACTTCGTTAGCGATC
ACGTCTGGACCGCTCCTATCATACTTATGATTGTCGGTGCCGCTGTGGCA
GTCATTTGCTTCTTGGGATGTTGTGGAGCCTTAAAAGAGAGCAGCTGTAT
GATACTTAGCTTTGCCCTTCTTGCCGTCGTGATATTTTTGTTCGAGATCG
GACTGGGCCTTGCTGGCTATGTGAAGCATACCGGTCTTCATCAGATCATG
GAGAGTCAGTTTAACTCGACCATGCAGCACTACAAGGAACGGGCCGACTA
TCGCGATGCTTGGACTTTGCTGCAAACCGAGCTAGATTGTTGCGGCATCA
ATGGGCCCAACGACTGGGAAACCGTTTACCGTAATAGTACCCTACCTGCA
GCCTGCTGCTCTGTAATTAATTTAAGCGAGGCCAAGGAATGTACAAATAC
TCACGCAACTCAGCATGGCTGCTTGCAGAAGCTCTTAGAGATTTTGGATT
CAAAGACCTTAATTTTGGCCTCCGTTGTTTTGGGAGTGGCGGGTATACAG
ATGCTCACTATACTGTTCGCTTGCTGCCTCTATCGTTCGTTTCGCAGAGC
TACGATCATGTTGCAAGCTTTCTAGACCAT
FMO08087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp39D-RB | 2359 | CG8666-RB | 186..890 | 9..712 | 3500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21356103..21356686 | 71..654 | 2905 | 99.8 | Plus |
| 2L | 23513712 | 2L | 21355532..21355594 | 9..71 | 315 | 100 | Plus |
| 2L | 23513712 | 2L | 21356738..21356802 | 649..712 | 275 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:25 has no hits.
FMO08087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:51 Download gff for
FMO08087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 183..897 | 1..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:57 Download gff for
FMO08087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 179..893 | 1..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:18 Download gff for
FMO08087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 179..893 | 1..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:18 Download gff for
FMO08087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21355525..21355594 | 1..71 | 94 | -> | Plus |
| 2L | 21356104..21356682 | 72..650 | 100 | -> | Plus |
| 2L | 21356740..21356805 | 651..716 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:57 Download gff for
FMO08087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21355525..21355594 | 1..71 | 94 | -> | Plus |
| arm_2L | 21356104..21356682 | 72..650 | 100 | -> | Plus |
| arm_2L | 21356740..21356805 | 651..716 | 95 | | Plus |
