FMO08092.5prime Sequence
962 bp (936 high quality bases) assembled on 2009-09-01
> FMO08092.5prime
CAGTCGACATGCCAGCTGCTGTGCGCAAGTTCCGCCGCGAGACCAGTGAA
ATCAGCTGCTGTCTGAAGTACCTTTTGTTCGCCAGCAATGTGATCCTGTG
GCTCTCGGCCCTGCTGGTCCTCTCCGTTGGCATCTGGGCCTGGAGCGAGA
AGGGCATGTTCCGCAACATTGCGCGGCTGCACTTCATCGCCCTGGACCCG
GCCTTCGTCCTGATCATCCTGGGAGGCGTCACCTTCCTACTGGGCTTCAT
GGGCAGCGTGGGCGCCTTGCGCGAGAACACCTGCCTCCTGGGGGCGTACG
CCATCTTCTTGAGTGTCTTGCTTATCGCAGAGATCGGCTTCTGTGCCGTG
GCCTTCGTGCTCAAGGACAAGGGCTGGATCAAAGACCAGGCCACCGAGGG
ACTCAAGGCCTTCATTCGCCACTATCGCGAGGACGCAGACCAGCAGAATC
TCATTGATTGGATCCAGGAGGATTGGTTGCAGTGTTGCGGCATTGATGGT
CCCAAGGACTGGGACAGCAACAACTACTTCAATTGCTCGTCTATCGCTAT
TGGCAGCAGGGAGGCGTGCGGAGTGCCATTCTCCTGCTGCCGCAGACGTC
CGCAGGAGGTGATCAAGAACAAGCAATGCGGCTACGATGTACGCAAGGAG
GGATATCCGGTGGATAGGAATATACATGAGCGTGGCTGCTTGCGCGCTGG
CGAGGATTGGCTGGAGGCCCATCTGATTAGTGTGGCGATTGGCTGCGTGG
CTCTGCTCGTCCTGCAGGCATGGAGTTGTCCAAAATAATCTACGAAAAGG
GCTGTGTTCAAGCAGGCGAAGATGGATGGAGCACACTTGATTATTATTTC
CGCAACTGTTATAGTTGTGATGTTTTTCAGATCTTGGGCATTTGCTTTGC
TCAGATCTGCGTGCGATATCTACACTCAAAAGTCAAAGTGGCACGCAAGC
TTTCTAGACCAT
FMO08092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-RB | 3030 | CG9093-RB | 85..1026 | 9..944 | 4545 | 99.3 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 85..843 | 9..767 | 3795 | 100 | Plus |
| Tsp26A-RC | 2919 | CG9093-RC | 85..732 | 9..656 | 3240 | 100 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 841..909 | 878..944 | 280 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6000312..6000599 | 9..296 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 6000804..6001083 | 377..656 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 6001159..6001270 | 657..768 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 6001477..6001589 | 767..877 | 465 | 98.2 | Plus |
| 2L | 23513712 | 2L | 6000663..6000744 | 296..377 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 6001667..6001734 | 879..944 | 225 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:35 has no hits.
FMO08092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:48 Download gff for
FMO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 77..1029 | 1..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:06 Download gff for
FMO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 80..1032 | 1..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:01 Download gff for
FMO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 80..1032 | 1..948 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:01 Download gff for
FMO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6000307..6000599 | 1..296 | 98 | -> | Plus |
| 2L | 6000664..6000744 | 297..377 | 100 | -> | Plus |
| 2L | 6000805..6001083 | 378..656 | 100 | -> | Plus |
| 2L | 6001159..6001269 | 657..766 | 99 | -> | Plus |
| 2L | 6001477..6001593 | 767..880 | 97 | -> | Plus |
| 2L | 6001669..6001740 | 881..948 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:06 Download gff for
FMO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6000307..6000599 | 1..296 | 98 | -> | Plus |
| arm_2L | 6000664..6000744 | 297..377 | 100 | -> | Plus |
| arm_2L | 6000805..6001083 | 378..656 | 100 | -> | Plus |
| arm_2L | 6001159..6001269 | 657..766 | 99 | -> | Plus |
| arm_2L | 6001477..6001593 | 767..880 | 97 | -> | Plus |
| arm_2L | 6001669..6001740 | 881..948 | 93 | | Plus |
