FMO08096.5prime Sequence
455 bp (455 high quality bases) assembled on 2009-09-01
> FMO08096.5prime
CAGTCGACATGGCGGCCTTCATAGCTAAGCAGATGGTTGGAAACCAATTA
AGTGCCGTTAAAGATGCTGCAGGCGGAGGTGATGGAGGCGATGATGGCGA
CGACAAGGAAAAGGCAGAGGAGGAGGAGAGGGAGCGTCAGGAGGCCATCA
AGGAGGCCGAGGACCGCCGAAAGGAAAAGCACCGGAAAATGGAGGAGGAG
CGCGAGAAGATGAGGCAAGACATTCGCGATAAGTACAACATCAAGAAGAA
GGAGGAGATCGTGGAGGCGGCCCCCCAAGAAGAGCCCAATCCCCTGATGC
GGAAAAAGAAGACGCCCGAGGAACTCGCCGCCGAAGCGGAGCAGGAAGAG
CTCGACGATTTTACAAAACTGAAAAATCAAATAGAAACGCAAGTAAATGA
GCTAAAAACTCAAATAGAGGGAAAATGTGTCATGCAGGCAAGCTTTCTAG
ACCAT
FMO08096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpx-RY | 3544 | CG32490-RY | 337..765 | 9..437 | 2145 | 100 | Plus |
| cpx-RU | 5137 | CG32490-RU | 726..1154 | 9..437 | 2145 | 100 | Plus |
| cpx-RX | 8078 | CG32490-RX | 607..1032 | 9..437 | 2045 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4295128..4295286 | 75..233 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 4295566..4295700 | 232..366 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4297480..4297558 | 359..437 | 380 | 98.7 | Plus |
| 3R | 32079331 | 3R | 4284352..4284406 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:48 has no hits.
FMO08096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:17:54 Download gff for
FMO08096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpx-RN | 389..805 | 9..437 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:57 Download gff for
FMO08096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpx-RU | 560..988 | 9..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:10 Download gff for
FMO08096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpx-RU | 726..1154 | 9..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:10 Download gff for
FMO08096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4284352..4284410 | 9..65 | 94 | -> | Plus |
| 3R | 4295120..4295286 | 66..233 | 97 | -> | Plus |
| 3R | 4295568..4295700 | 234..366 | 100 | -> | Plus |
| 3R | 4297488..4297557 | 367..436 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:57 Download gff for
FMO08096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 110074..110132 | 9..65 | 94 | -> | Plus |
| arm_3R | 120842..121008 | 66..233 | 97 | -> | Plus |
| arm_3R | 121290..121422 | 234..366 | 100 | -> | Plus |
| arm_3R | 123210..123279 | 367..436 | 100 | -> | Plus |
