FMO08102.5prime Sequence
982 bp (982 high quality bases) assembled on 2010-03-10
> FMO08102.5prime
CAGTCGACATGTTGCCGAAATTAAAAACCGGTGGAGGGTTCTTCTCCTAT
TTTAAGACTGAAAAGGGCCGAAAACTCGTATTCTACGCGGCGGGAGCCAC
CACAGTGGGCCTCTTTCTTGGAAACTTCCTGCCGCACACATTCGGCCTGA
AATATTACCGCGATTTCGTGCAATGCTACCAACACGGCGTGGGGCGTCCA
GTGCCGGAGGCAGTGCAGCAGCGCCTGGAAAAGGCATTGGATCAGCTGGG
CGTGACGCCCTTTGAGCGAAAGTTTGTGAAGCCCTTCACCGTCTTTGGAT
TCGATGTTTTCCAGGCGGGCACCACTAAGTTTCGATTTGGAGGCGCTTTG
GGCATACCGGTGAACTATGGATACGACAGTCTGGAGGAGATTAAGCGGGC
AGACATTCGGTTTAGAGACAAACAGATCAACTGGAGTTCTCCCAGCGGAA
AACTGCTAGAGGAAGCCATCGTTTTGAATGAGGATGAACAGATTTTCGGT
CTTAGCAAGGCTGTTCTGCAGATGCAAACCCATCGGGTACTGCTCAACTC
CATCTTTCCCAGCGTCAGCTTTCTTATGGTTTACACCATGGGTCACTACC
TCAACCTGCGGCTAGATCTCTTCGCCCGCCATGGAAGCGTGCGGTTTGTG
CTCTACAGCATTCTGGGTCTGTTTGGCTTAGGGCTCTGGTCCTTCATGAA
AGACTACAATCAGGTCTCTACGGACGCAGAGATTGACCAGCGACTGGCCA
CGATGGGTCCCCAACTTGTGGCAGCTGGAGCTAGCTTTTACGACAAACAT
CTAAAGAAGAACATCGCGCTGAGGGAGCTGATTGGAAATGACGTTTACAC
TGCACTGGGCACGAAAACTATATGATTCGGCAAAAGTCCATGCCGCTAAC
AGCACGAAATCTTTCTTCCTGGAGAAGCTGGAGGAACTCAAAAGGCGCAA
CAGCCTGAAACAGAGGCAGCTTTCTAGATCAT
FMO08102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33506-RA | 1073 | CG33506-RA | 45..1004 | 9..965 | 4725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14857905..14858364 | 641..182 | 2300 | 100 | Minus |
| 2R | 25286936 | 2R | 14857516..14857845 | 965..639 | 1500 | 99.1 | Minus |
| 2R | 25286936 | 2R | 14858424..14858596 | 181..9 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:26 has no hits.
FMO08102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:43 Download gff for
FMO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33506-RA | 2..970 | 2..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:11 Download gff for
FMO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33506-RA | 35..1004 | 1..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:27 Download gff for
FMO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33506-RA | 35..1004 | 1..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:27 Download gff for
FMO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14857516..14857845 | 639..965 | 99 | <- | Minus |
| 2R | 14857908..14858364 | 182..638 | 100 | <- | Minus |
| 2R | 14858424..14858601 | 1..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:11 Download gff for
FMO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10745021..10745350 | 639..965 | 99 | <- | Minus |
| arm_2R | 10745413..10745869 | 182..638 | 100 | <- | Minus |
| arm_2R | 10745929..10746106 | 1..181 | 97 | | Minus |
