FMO08103.5prime Sequence
497 bp (497 high quality bases) assembled on 2010-03-10
> FMO08103.5prime
CAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAG
CTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGG
CACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGAGAAGGGCG
TGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGGAGACCAAG
TACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTAGACAAGGG
CAAGGTCACGCTGCACCGCGATGCCAGCATACCAGTAGTCATTTCGAAAA
CGCTAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCAT
ATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTCTG
CATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAGG
CGGATCCATCGACGGCCTCGTCCAAGAAAGCAAGCTTTCTAGACCAT
FMO08103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RG | 2298 | CG6584-RG | 261..731 | 9..479 | 2355 | 100 | Plus |
| SelR-RJ | 2392 | CG6584-RJ | 376..825 | 9..479 | 2030 | 95.5 | Plus |
| SelR-RH | 2277 | CG6584-RH | 261..710 | 9..479 | 2030 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10865454..10865650 | 479..283 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 285..116 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:12 has no hits.
FMO08103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:45 Download gff for
FMO08103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 268..749 | 1..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:05 Download gff for
FMO08103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 253..734 | 1..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:34 Download gff for
FMO08103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 253..734 | 1..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:34 Download gff for
FMO08103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865451..10865647 | 286..483 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 121..285 | 100 | <- | Minus |
| 3R | 10866809..10866928 | 1..120 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:05 Download gff for
FMO08103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6692251..6692415 | 121..285 | 100 | <- | Minus |
| arm_3R | 6692531..6692650 | 1..120 | 98 | | Minus |
| arm_3R | 6691173..6691369 | 286..483 | 98 | <- | Minus |
