Clone FMO08104 Report

Search the DGRC for FMO08104

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:81
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG41128-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08104.5prime Sequence

242 bp (242 high quality bases) assembled on 2010-03-10

> FMO08104.5prime
CAGTCGACATGACTTCTCGCGATAATATTTTCGAGGAAAAAATATGCAAT
AGATTAGATCATTGCGTTTCTGATGTATTAATTAAAGGATGTGGAGGCGT
AATTATTGGATCTGCTGTATCTTTCTTAATTTTAAAGAGACGAGCATGGC
CTGTATGGCTCGGCGCTGGATTTGGAATGGGCATCGCTTATAGGACGTGT
GAAAAGGATTTAAATTCTTTAAAAGCAAGCTTTCTAGACCAT

FMO08104.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG41128-RB 364 CG41128-RB 96..311 9..224 1080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 3752167..3752300 91..224 670 100 Plus
3R 32079331 3R 3750458..3750542 9..93 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:34:06 has no hits.

FMO08104.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:30:51 Download gff for FMO08104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG41128-RA 33..268 1..236 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:08 Download gff for FMO08104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG41128-RB 45..280 1..236 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:59 Download gff for FMO08104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG41128-RB 88..323 1..236 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:59 Download gff for FMO08104.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 3750450..3750539 1..90 95 -> Plus
3R 3752167..3752312 91..236 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:08 Download gff for FMO08104.5prime
Subject Subject Range Query Range Percent Splice Strand
3RHet 1806569..1806714 91..236 96 <- Minus
3RHet 1808342..1808431 1..90 95   Minus