Clone FMO08106 Report

Search the DGRC for FMO08106

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:81
Well:6
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14823-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08106.5prime Sequence

374 bp (-88 high quality bases) assembled on 2010-03-10

> FMO08106.5prime
CAGTCGACATGGAGCCCACCTGCAACAGCGGTGTTTGGAAATTGGCCAAA
TACAGTGAGGATGATGTGAAAACGGATGAGTCCAAGGGGGTGGAGCATCA
GGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAAGCGGAAAC
GATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGATTACGGTTGCC
ATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATGCACTTAAA
ACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGATCGGGGGC
AAGTGGAGGGCCTGGAGGAAGACTTTCCCATGGTCACCGCTGCGGGAGTG
GCTGACGCAAGCTTTCTAGACCAT

FMO08106.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RB 974 CG14823-RB 66..418 4..356 1525 95.5 Plus
CG14823-RD 1108 CG14823-RD 66..417 4..355 1505 95.2 Plus
CG14823-RA 2098 CG14823-RA 66..413 4..351 1500 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066730 4..355 1505 95.2 Plus
Blast to na_te.dros performed 2014-11-28 19:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 1991..2014 230..253 102 91.7 Plus

FMO08106.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:47 Download gff for FMO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RC 62..418 1..356 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:54 Download gff for FMO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RB 62..418 1..356 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:37 Download gff for FMO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RB 62..418 1..356 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:37 Download gff for FMO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7066375..7066736 1..362 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:54 Download gff for FMO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059475..7059836 1..362 93   Plus