FMO08108.5prime Sequence
728 bp (728 high quality bases) assembled on 2010-03-10
> FMO08108.5prime
CAGTCGACATGAAACTCTACGCCGTATCCGATGGTCCGCCTTCCCTGGCC
GTTCGCATGACCCTGAAGGCCTTGGATATACAATATCAACTCATCAATGT
GGACTTTTGCGCCATGGAACATCGCTCTGAGGAGTACTCGAAGATGAATC
CGCAAAAGGAGATACCCGTGCTGGACGACGACGGTTTCTATCTATCGGAG
AGCATTGCCATTATGCAATACCTCTGCGACAAGTACGCGCCGGATTCAAC
GCTATATCCGCAGGACGTCAATGTGAGAGCAGTAATCAATCAGCGGCTAT
GCTTTAACATGGGATTCTACTATGCCCCCATATCCGCCCACAGCATGGCG
CCCATTTTCTTCGACTACAAACGTACGCCCATGTCGCTAAAGAAGGTGCA
GAACGCACTTGATGTGTTCGAAACCTATTTGCAGCGACTGGGCACTAAGT
ACGCGGCAGGCGAGAACATAACCATTGCAGACTTCGCTCTCATTTCGGCC
ACGATCTGCTTGGAGGCAATTAACTTTGACTTGCACCAGTTTACGTTGGT
GAACAAGTGGTACGAAACCTTCAAGGTGGAATACCCGCAGCTGTGGGAGA
TCGCCAACAGCGGCATGCAGGAGATAAGTGCGTTTGAGCAGAACCCACCG
GATATGTCACACATGGAACACCCATTCCATCCGACGCGCAAGTCTATGGG
CCTGAAGTTGGCAAGCTTTCTAGACCAT
FMO08108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 2772..3473 | 9..710 | 3510 | 100 | Plus |
| gfzf-RD | 1200 | CG33546-RD | 62..763 | 9..710 | 3510 | 100 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 2772..3473 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7146317..7146885 | 710..142 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 7146945..7147079 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:35 has no hits.
FMO08108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:30:54 Download gff for
FMO08108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RD | 55..766 | 1..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:52 Download gff for
FMO08108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2768..3479 | 1..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:06 Download gff for
FMO08108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2768..3479 | 1..718 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:06 Download gff for
FMO08108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7146311..7146883 | 144..718 | 99 | <- | Minus |
| 3R | 7146945..7147083 | 1..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:52 Download gff for
FMO08108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2972667..2972805 | 1..143 | 97 | | Minus |
| arm_3R | 2972033..2972605 | 144..718 | 99 | <- | Minus |
