FMO08113.5prime Sequence
821 bp (821 high quality bases) assembled on 2010-03-10
> FMO08113.5prime
CAGTCGACATGGGAACCATGACCAAGGACTACGACTATCTGCTAAAGGTT
CTACTGGTGGGCGACAGCGATGTGGGCAAGCACGAGATTCTCTCAAACCT
GGAGGATCCCTCCACGGAGAGTCCCTTCTGCAGTGGGAACGACTGCACAT
CTCATATCCTTCAAACGGTAGCCTACAAGACGACCACCATCCTGCTGGAG
GGCAAGCGGGTGAAGCTGCAGCTGTGGGACACCTCCGGCCAGGGACGCTT
CTGCACGATCATTCGCTCCTATTCGCGCGGCGCCCAGGGCATCATCCTCG
TCTACGACATCACCAACAAGTGGAGCTTCGACGGTATCGATCGGTGGCTC
AAGGAGGTCGACGAGCACGCCCCAGGAATTCCGAAGGTTCTTGTCGGGAA
TCGCCTGCACTTGGCCTTCAAGCGACAGGTGGCGGCCAAACAGGCCGAGA
CCTACGCCAGCCGCAACAATATGTCCTGCTTCGAGATATCGCCTCTCTGC
AACTTCAACATCCGCGAGTCCTTTTGCGAACTGGCGCGGATGGCCCTGCA
TCGCAACGGCATGGAGCACATCTGGCGCAGCAATAAGGTGCTGTCGCTTC
AGGAATTGTGCTGCAGGACAATTGTGCGAAGGACGAGCGTGTATGCGATC
GATTCGCTGCCGCTGCCGCCGTCGGTGAAGTCGACGCTCAAGTCATACGC
GCTGACCACGTCCCAGTGCTTCAATTCACTGACCCAGAGCTCCAAGAGCA
AGAACCGCTGCAAGACGCCGACGAGCAGCAGTCGGAATAGCTGTGCGATC
GCGGCAAGCTTTCTAGACCAT
FMO08113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RB | 1618 | CG1900-RB | 249..1045 | 7..803 | 3985 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 244..876 | 171..803 | 3165 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 383..1015 | 171..803 | 3165 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 110..244 | 7..141 | 675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 588..364 | 1125 | 100 | Minus |
| X | 23542271 | X | 12461456..12461680 | 365..141 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460369..12460584 | 803..588 | 1080 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 141..7 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 317..198 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:21 has no hits.
FMO08113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:52 Download gff for
FMO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 238..1041 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:07 Download gff for
FMO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 242..1045 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:38 Download gff for
FMO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 242..1045 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:38 Download gff for
FMO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12460369..12460583 | 589..803 | 100 | <- | Minus |
| X | 12460989..12461211 | 366..588 | 100 | <- | Minus |
| X | 12461456..12461679 | 142..365 | 100 | <- | Minus |
| X | 12461736..12461875 | 1..141 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:07 Download gff for
FMO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12354402..12354616 | 589..803 | 100 | <- | Minus |
| arm_X | 12355022..12355244 | 366..588 | 100 | <- | Minus |
| arm_X | 12355489..12355712 | 142..365 | 100 | <- | Minus |
| arm_X | 12355769..12355908 | 1..141 | 98 | | Minus |
