FMO08116.5prime Sequence
863 bp (863 high quality bases) assembled on 2010-03-10
> FMO08116.5prime
CAGTCGACATGAGAATAGTTGGATCCAGTATGCTGGCAGCCCTCAAGCGG
CTATCAACGAACCAACCCCCCACCTTGGTCAGTAACATCCGGTACCTGAG
CTCGTTTGGAACCATGAGCCTGCCGGAGCGCCAGCCCTTTTCTCCAGACT
TCTTCTTCCGTCAACTTTTTGATGGAGAAAGCAGCACCTATAGCTACCTT
CTGGCCGATCTAAAGAATGGTCAGGCCGTAATCATTGATCCTGTTTTGGA
GCAGGCGAAACGAGATGCCCAGCTGGTCAAGGATCTGGGCTTCGAGTTGA
AGTATGCCATCAACACACACATGCATGCGGATCACATAACGGGCAGTGGC
TGGTTGAGGAAGTTAACTGGGTGTCAATCTGTGATTGCTGCCGCCAGTGG
AGCCAAGGCGGATCGTCACCTGAATGAAGGGGATCGCATAGATTTCGGCA
CCCATGTGATTGATGCTCTGGCCACTCCGGGACACACAAATGGCTGCATG
ACCTATGTGATCAAGGATCAGGGTTGTGTCTTTACCGGAGATACTCTCCT
GATACGAGGCTGTGGACGCACCGATTTCCAGGAAGGCTGCCCACGTAATC
TCTACGAGAATGTGCACAGTAAGATCTTCACACTCCCGGAAAACTTTCGC
ATATATCCGGCGCACGACTATAAAGGTCAAATGGAAAGCAGTGTGTGGGA
GGAGAAGCGGTATAACCCCAGACTGACTAAGGATATTGAAGAGTTTGTCA
AAATCATGGAAAACCTAAATTTACCATATCCCAAGAAAATAGATGCCTCG
CTGCCCGCCAATCGAGAGTGCGGGGTGTACGATATACCCAAGGAAGCAAG
CTTTCTAGACCAT
FMO08116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30022-RB | 1356 | CG30022-RB | 417..1253 | 9..845 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11387545..11387908 | 673..310 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 11388208..11388363 | 164..9 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11388000..11388148 | 309..161 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 11387372..11387490 | 792..674 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 2374937..2375055 | 674..792 | 565 | 98.3 | Plus |
| 2R | 25286936 | 2R | 2801494..2801612 | 674..792 | 565 | 98.3 | Plus |
| 2R | 25286936 | 2R | 2374640..2374775 | 161..296 | 455 | 89 | Plus |
| 2R | 25286936 | 2R | 2374785..2374882 | 576..673 | 445 | 96.9 | Plus |
| 2R | 25286936 | 2R | 2801249..2801359 | 161..271 | 420 | 91.9 | Plus |
| 2R | 25286936 | 2R | 2801354..2801439 | 588..673 | 400 | 97.7 | Plus |
| 2R | 25286936 | 2R | 11387263..11387318 | 845..790 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:51 has no hits.
FMO08116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:55 Download gff for
FMO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 405..1256 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:05 Download gff for
FMO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 407..1258 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:14 Download gff for
FMO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 407..1258 | 1..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:14 Download gff for
FMO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11388208..11388371 | 1..164 | 97 | | Minus |
| 2R | 11387258..11387315 | 793..853 | 93 | <- | Minus |
| 2R | 11387372..11387490 | 674..792 | 100 | <- | Minus |
| 2R | 11387545..11387908 | 310..673 | 100 | <- | Minus |
| 2R | 11388000..11388144 | 165..309 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:05 Download gff for
FMO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7274877..7274995 | 674..792 | 100 | <- | Minus |
| arm_2R | 7274763..7274820 | 793..853 | 93 | <- | Minus |
| arm_2R | 7275050..7275413 | 310..673 | 100 | <- | Minus |
| arm_2R | 7275505..7275649 | 165..309 | 100 | <- | Minus |
| arm_2R | 7275713..7275876 | 1..164 | 97 | | Minus |
