FMO08118.5prime Sequence
961 bp (961 high quality bases) assembled on 2010-03-10
> FMO08118.5prime
CAGTCGACATGCAGAAGCTCTACCACGAGGAGCGCCGTCGCAAGTATCTA
CAGGAGCTGCAGGACATGAATTCGCGCCGCCACACGGACAACTTCACCCC
GTCGCAGAAGTCGCCCATCGCCCTCAATCGCTACGATGACTTCCCCACGG
ACGTGACCCTCAAGTCGCTGGTGGGCCCCAAGACGGTGGCCCGGGCTCTC
TTTAACTTCCAGGGACAGACCTCGAAGGAGCTATCCTTCCGCAAGGGCGA
CACAATCTACATCAGGCGGCAGATTGATGCCAACTGGTATGAGGGCGAGC
ACAATGCCATGATTGGACTGCTTCCAGCCAGCTATGTTGAGATTGTCAGT
CGAGATGGAGCCCGTACCCCATCCAAACGGCCATCGGAGGGTCAGGCCCG
TGCCAAATACAACTTCCAGGCCCAGTCGGGCATTGAACTCTCCTTGAACA
AGGGCGAATTGGTCACTTTGACACGCCGAGTGGATGGCAACTGGTTCGAG
GGCAAGATTGCCAACAGGAAGGGCATCTTCCCGTGCTCCTACGTGGAGGT
ACTTACTGATATTGGTGCTGAGGACATTGCGGCCAGGACAACCACCGTGA
TCACCAGCCAGAGCACCACGAATCTGCGGCCCAATCTCGACGTGCTGCGC
ACAAACATCAACAATGAGTTCAATACGCTGACGCAAAATGGAGCACAGCC
ACCGAACGGAATCCTCAAGGAAACGCGGACACTTCACAAGACGGACGCCC
TCCATGTGGACACCAGTTCCGAACCATTGGCGTACCGCGCACTGTACAAG
TACCGGCCCCAGAACTCCGACGAACTGGAACTGCTCGAGGGAGATGTGGT
CCATGTGCTGGAGAGTGCGACGACGGATGGTCGTGGGCACCTCGCAGAGG
ACCGGCTGCTTCGCACATTCCCCGGCAACTACGTGGACGGGCCGCAAGCT
TTCTAGACCAT
FMO08118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RY | 8546 | CG18408-RY | 6892..7832 | 7..943 | 4605 | 99.6 | Plus |
| CAP-RX | 8834 | CG18408-RX | 7180..8120 | 7..943 | 4605 | 99.6 | Plus |
| CAP-RW | 5528 | CG18408-RW | 3874..4814 | 7..943 | 4605 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10305736..10305972 | 547..783 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 10304711..10304931 | 7..227 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 10305470..10305680 | 340..550 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10306145..10306303 | 782..937 | 645 | 98.1 | Plus |
| 2R | 25286936 | 2R | 10304988..10305102 | 227..341 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:05 has no hits.
FMO08118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:30:57 Download gff for
FMO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RC | 1663..2607 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:51 Download gff for
FMO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3870..4814 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:22 Download gff for
FMO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3870..4814 | 1..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:22 Download gff for
FMO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10306145..10306310 | 782..943 | 97 | | Plus |
| 2R | 10304707..10304930 | 1..226 | 98 | -> | Plus |
| 2R | 10304988..10305102 | 227..341 | 100 | -> | Plus |
| 2R | 10305472..10305678 | 342..548 | 100 | -> | Plus |
| 2R | 10305738..10305970 | 549..781 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:51 Download gff for
FMO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6193650..6193815 | 782..943 | 97 | | Plus |
| arm_2R | 6192212..6192435 | 1..226 | 98 | -> | Plus |
| arm_2R | 6192493..6192607 | 227..341 | 100 | -> | Plus |
| arm_2R | 6192977..6193183 | 342..548 | 100 | -> | Plus |
| arm_2R | 6193243..6193475 | 549..781 | 100 | -> | Plus |
