FMO08120.5prime Sequence
1079 bp (910 high quality bases) assembled on 2010-03-10
> FMO08120.5prime
CAGTCGACATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGCATGTAACC
AGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTGTCCTGCGT
TCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCACAAGTTCG
ATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTGGATTTGGG
CTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTATTTCCCAC
CCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGCCCTCTCAA
ATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGGTGAAGGGC
TCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGTCGGGAGGC
GGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTTCTCGCGAA
AGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGACCTTGGAC
TACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCAGATCGCAC
GGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAAGCACTCCG
ATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGATCATGTCG
CAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGATGGCACCTT
CCATCGGTTTTTGACCAAAAATACGGCTGTTGCCGCCGGCGGCTGTGGTC
GGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGTGATGGCAAT
GCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAATTTGTGCA
GTTTCATCCCACTGGGATCCTACGGAGCCGGATGCCTTATCACCGAGGGA
GTTAGGGGCGAGGCGGTTTCTTCTTGAACTGCAAAGGAAGACCTTTCATG
GCACGCTATGCTCCAACGGCCAGGATCTGCTTCAGAATGTTGGTGGCGCG
GGCATGACCATGAGGTTCTGGCATGCAATGGTTTGGTCCGCTCAAGAATC
ATGGTGACTCTTCCACTACACCATAATGA
FMO08120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 67..1117 | 9..1053 | 4775 | 97.5 | Plus |
| SdhA-RA | 2750 | CG17246-RA | 405..1148 | 149..899 | 540 | 72.8 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 318..1061 | 149..899 | 540 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11923641..11924691 | 1053..9 | 4580 | 97.2 | Minus |
| 2R | 25286936 | 2R | 19393998..19394324 | 475..149 | 450 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:03 has no hits.
FMO08120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:59 Download gff for
FMO08120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..1126 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:14 Download gff for
FMO08120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..1126 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:20 Download gff for
FMO08120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..1126 | 1..1063 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:20 Download gff for
FMO08120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11923632..11924699 | 1..1063 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:14 Download gff for
FMO08120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11916732..11917799 | 1..1063 | 96 | | Minus |
