FMO08122.5prime Sequence
1077 bp (937 high quality bases) assembled on 2010-03-10
> FMO08122.5prime
CAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATCAGGAACTG
GCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTACACCTTTGG
CCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGGCGTTCTTG
GCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACACGCCCGAT
CCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGCGTTGACAT
CATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGTGCTCAAGC
GCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAATCCGATCTG
AGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACCGAGTCCGA
TTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCTCATCCCGC
TCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACTGGTTCTTT
GAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCCGAGGAGAA
TCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCCCAATGGCT
ACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACCATGTGAAG
CACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATAGCCACCAA
TCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAGCAAAAACG
CTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCAAACCGCAGCCC
CAGATGTGGGACTTGGTCCGGAGCTGCGCGATAAGTACGAGATTCCGCGC
TCGGAGATCAGCTGCTGCGCAAACTGGGACGCGCAACTTGGCGAGTTCTT
CTACGGCAATGGCGCACAGCATCGATGTGGCGGTCAAACGCTGGCGCGAA
GCACCATGTCTCGGCTGCCTTTCTTCAGAGAGCCCGAATATAAGAAGTCC
CCACACACCGCCGGGTGGCCTCTCATGCGTTGTCCGCAGAGAGAACTCAT
TTAACTCGCAGGAGATCATGTCCAAGG
FMO08122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 2815 | CG7524-RD | 1031..2115 | 8..1077 | 4640 | 96.4 | Plus |
| Src64B-RC | 2567 | CG7524-RC | 783..1867 | 8..1077 | 4640 | 96.4 | Plus |
| Src64B-RI | 4338 | CG7524-RI | 933..2017 | 8..1077 | 4640 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4598154..4598419 | 273..8 | 1330 | 100 | Minus |
| 3L | 28110227 | 3L | 4595692..4595945 | 744..491 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 4596064..4596284 | 490..270 | 1090 | 99.5 | Minus |
| 3L | 28110227 | 3L | 4595425..4595624 | 938..745 | 685 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:09 has no hits.
FMO08122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:30:55 Download gff for
FMO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RC | 843..1832 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:15 Download gff for
FMO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 929..1918 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:58 Download gff for
FMO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 929..1918 | 1..986 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:58 Download gff for
FMO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4595425..4595624 | 745..938 | 96 | <- | Minus |
| 3L | 4595692..4595945 | 491..744 | 100 | <- | Minus |
| 3L | 4596064..4596280 | 274..490 | 100 | <- | Minus |
| 3L | 4598154..4598422 | 1..273 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:15 Download gff for
FMO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4595425..4595624 | 745..938 | 96 | <- | Minus |
| arm_3L | 4595692..4595945 | 491..744 | 100 | <- | Minus |
| arm_3L | 4596064..4596280 | 274..490 | 100 | <- | Minus |
| arm_3L | 4598154..4598422 | 1..273 | 98 | | Minus |
