FMO08123.5prime Sequence
1122 bp (1016 high quality bases) assembled on 2010-03-10
> FMO08123.5prime
CAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGTTTTCGCTG
TGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCACGGTACTAA
TCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACGCATCCTGC
TGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCACGGATCAC
TTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATGGACGACGA
CCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCCGATCGCCT
ACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGACCTGCGCG
AAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTACTGGCAGAC
GCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTATTACGACA
TCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTGGAATGATC
GACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGGTTTGACGG
CCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTACATCTGGT
ACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCATATCTGATC
GCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGCTCCGTGTC
GATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCGGGTCATCT
ACAACCGACCGCCCGACGACCAGAAGAAGGGATTTGCTGTCTGCGTCAAG
GGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATTGAGTGGAT
CGAATGCTCAATATCCTTGGGCGGACAAATCTACTTCTACAATCTTCAGG
TCCATCCCAACATCACCAAAGTGCTTATCACTACGACAGGAGGGCAGGTC
CAGTGATCTCGCTGACTGTCCGGTGGCAGCAAACGTGCCGGGATTCCAGC
ACCTTACTACTAGAAGACGACCCAAGCGCAGAACGAGTATTCCGTACAAC
GACTGTCTGTACAAATCCTCTATCTTGTACGACTAATTGCACTGCTGGAC
TGGACGAGGAATATGCGAGGCG
FMO08123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3655-RD | 4325 | CG3655-RD | 1029..2159 | 1..1109 | 4945 | 97.1 | Plus |
| CG3655-RC | 4766 | CG3655-RC | 1470..2600 | 1..1109 | 4945 | 97.1 | Plus |
| CG3655-RB | 4995 | CG3655-RB | 834..1964 | 1..1109 | 4945 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1076431..1077100 | 901..235 | 3200 | 99.6 | Minus |
| X | 23542271 | X | 1077210..1077446 | 237..1 | 1155 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:07 has no hits.
FMO08123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:50 Download gff for
FMO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3655-RB | 647..1786 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:07 Download gff for
FMO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3655-RB | 834..1973 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:26 Download gff for
FMO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3655-RB | 834..1973 | 1..1116 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:26 Download gff for
FMO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1076433..1077097 | 238..899 | 99 | <- | Minus |
| X | 1077210..1077446 | 1..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:07 Download gff for
FMO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 970466..971130 | 238..899 | 99 | <- | Minus |
| arm_X | 971243..971479 | 1..237 | 99 | | Minus |
