FMO08125.5prime Sequence
1132 bp (1024 high quality bases) assembled on 2010-03-10
> FMO08125.5prime
CAGTCGACATGGACACTGTCTATGGGACAAAGAAATACTTCCAGAGTTTA
TCCGGCGTGAGTGATATATACAGGGCGCAGACATGTCGGCAAATGAGCGC
GGACTATACATACCAGAACACAGTTGGCCGGAGGTCTCAGCTGGGGGCAT
ACTACCACATGAACAAACAGCCCTCGTACACCAATGAGCACAGTCTGAAC
AGTCAGTATGGATACAATACGTGGGGCATATGGCGGGATGGCAGGAACAT
CGCCCCATCCACCTTCTCGGCCAAGACGCACACGCAGTACCCCAAGAATC
GATCATTCAGCATTATCCTTACAACGGCTGCATTTATCGTCCTGCTTACG
GTCATCTCAATCGCCGGATTGGCCTTTTACTTCAGCTCTATAAAAACCAA
TCTGGAGGATCCTGTCATGGGCTTTGAGGGTTCCTTCCGCATTGCCAAAG
GGGATCTCTTCTCCACTGGTTTGAAGTACAACCACACCACCACCTACAAA
CAGAAAATCGATTTCTATAAGAGATTCGTGGAGCGTTCCATGATGGACAA
TGGATTGCAGCCACTGCGCACCGATGTCTGGGGCTTTGGTGACGGTCCAT
TAATAAAGGTCTCATTCCGCGTATTCCTCGATGTCCGTAAACTGCCGCAA
AACATCCTGAGTGTCGAGGAGTATATCAAGGAGTCTCTGTTCCTGGAAAC
TTCCGCTGCGAAATCTTTATATCGTTCACTACGTTTGGACACGGAGTCGG
TGGAGATCAAGCGCATAATGGATGAACAGGTGGTGCGATCTGCAGCGATA
TTAAAAGAAGCCCAAACAGTGCCCACTAGTCAAACACAACTGGAAAAGCG
TCTCATGAAAAAGGCAGCACACCGGCACACCTCCAGTTCATCCTAACCGA
ATCCGATACCACGCCCAAGCCGAAGATCCCCTGCTGCGCAGTCATTCCGC
GACGAGAGCCCGATATCGATGTGAGAATGCACCAGTTATACAGGATCTTT
CGAGGTTCTTCGAGATCACCAAACGGACGCGGACATAGCCCGAGAGACTC
CGCCACCCGCGCTACAAGCGCTAGTAGCACCTGCACCAAGCATGGCGTTA
CCCCTTTCCTGGAGGTGAGCAGAGCGAAACTC
FMO08125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1273-RB | 4187 | CG1273-RB | 282..1374 | 9..1082 | 4985 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4273780..4274096 | 95..411 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 4274160..4274397 | 412..649 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 4274456..4274618 | 650..812 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 4274677..4274918 | 813..1042 | 630 | 94.6 | Plus |
| 3L | 28110227 | 3L | 4272111..4272197 | 9..95 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:53 has no hits.
FMO08125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:04 Download gff for
FMO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1273-RB | 280..1383 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:08 Download gff for
FMO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1273-RB | 282..1385 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:26 Download gff for
FMO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1273-RB | 282..1385 | 9..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:26 Download gff for
FMO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4272111..4272197 | 9..95 | 100 | -> | Plus |
| 3L | 4273781..4274096 | 96..411 | 100 | -> | Plus |
| 3L | 4274160..4274397 | 412..649 | 100 | -> | Plus |
| 3L | 4274456..4274618 | 650..812 | 100 | -> | Plus |
| 3L | 4274677..4274976 | 813..1090 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:08 Download gff for
FMO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4274160..4274397 | 412..649 | 100 | -> | Plus |
| arm_3L | 4273781..4274096 | 96..411 | 100 | -> | Plus |
| arm_3L | 4272111..4272197 | 9..95 | 100 | -> | Plus |
| arm_3L | 4274456..4274618 | 650..812 | 100 | -> | Plus |
| arm_3L | 4274677..4274976 | 813..1090 | 92 | | Plus |
