FMO08128.5prime Sequence
1152 bp (1040 high quality bases) assembled on 2010-03-10
> FMO08128.5prime
CAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCATCGCTTTAT
GGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATGCACTACCC
GTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTTCATGAGCC
TCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCTGGGGATCT
GCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTTAATGTAGG
AGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCTGCTCATTG
CCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTGTATCCTCG
CCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGCGTCAACTT
GCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCTCTGCTTGG
TGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGGATGTGCCT
GTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTAGCATACAC
GGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCGCAAGCTAC
GTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTGGCGTGTGC
TATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTGTACGCTTA
CAACCAACACGTAGTGGTCACTGAACTAACAAGGAAATCCCCGCTGAGGG
GAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTAAACGGCTGC
CCAGTAAACAGCGAGGAGAGTTGGGTGACATGCCTGCAGAACTCTCTGAA
GCTCAAGCCGGGCTACTGTGTGAGTGCGGACTTCGTGCAGCTTACGACGA
AAGCAGCGCCATCTCACATCATAGCATTGATGGTCAGCTACAGTGCTGTG
ATGAACTAAATCCGACGTAGCTGCTTCGAGGTGGTGAGGACGCAAATGAG
AATGTGCCGGTGGAGCTGCCGCAGCATGTATGTCTCATGTGCGCCGCACT
TTGGAGGAGGTTTCCGAGCACTGCTCGTCGGAGTTTGCAACGAGGATTCT
GCCTACGACGCTTATACAAATATCCTGCTAATGACGTCAAGCACGATTCC
GG
FMO08128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1434 | 8..1142 | 5365 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842728..11843324 | 1109..520 | 2575 | 98.2 | Minus |
| 2R | 25286936 | 2R | 11843390..11843829 | 521..82 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 83..8 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:21 has no hits.
FMO08128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:11 Download gff for
FMO08128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 281..1432 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:49 Download gff for
FMO08128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1434 | 1..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:44 Download gff for
FMO08128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1434 | 1..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:44 Download gff for
FMO08128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842727..11843322 | 522..1109 | 98 | <- | Minus |
| 2R | 11843390..11843827 | 84..521 | 100 | <- | Minus |
| 2R | 11843879..11843958 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:49 Download gff for
FMO08128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7730232..7730827 | 522..1109 | 98 | <- | Minus |
| arm_2R | 7730895..7731332 | 84..521 | 100 | <- | Minus |
| arm_2R | 7731384..7731463 | 1..83 | 96 | | Minus |
