FMO08130.5prime Sequence
1129 bp (997 high quality bases) assembled on 2010-03-10
> FMO08130.5prime
CAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCTTAGCAAGT
GTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGGAATTTTTG
TTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTGCGGCAATA
CCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGGTTTTAATT
GAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGAATAAATGC
ACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAATACCATTG
AGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAACCAACAAC
GAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACAACACCCAA
CGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGT
ATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGTATCCAGTA
AACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCAAACAACGG
TGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGTTGGAAATC
CAACAAACAACGGAGGGAACCCGACTACCAATTTTGGAAATCCAACAAAC
AACGGAGGGAACCCGACTACCAATGTTGGAAGCTCAGAGCTTTTGTCACC
AAGTTGCGGCATGAGCAACGCAAATGGCTTGCAAATGGTAGAAGGAATAA
CCATTGATCAAGCACGACCAGCTCAATATCCCTGGGCTGTTGCTATTTTT
CACAATGGACAGTACTTGGCTGGCGGATCCCTGATTCAACCAAATGTCGT
TCTAACAGTAGCTCACCGGGTAATTACAATCGAAACCGAACTTGTGGTCA
GGGCCGGCGATTGGGACTTAAATCCGATCGAGAGATATTTTTGGTCTGGA
GCAGCGCGAAGTGAAAGGGCAGTAATCCATGAAGGATTTGACTTCAATCA
AGGTGGCCAACAACTTGGGCGTTACTTTTTCTAATTCGCCCTTCAAACTG
AATGATCCATAGACTATCTGGTTTGCCTCACCAAATATCGTCGCAGACGT
CTTGCACGGTGCGGTGGGGGCAAATGAGA
FMO08130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPH93-RA | 1587 | CG6639-RA | 26..1158 | 7..1129 | 5120 | 97.8 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..658 | 438..681 | 645 | 83.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 457..700 | 375..639 | 645 | 83.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..616 | 459..681 | 605 | 84.8 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 478..700 | 375..597 | 605 | 84.8 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..531 | 480..617 | 450 | 88.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 499..636 | 375..512 | 450 | 88.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..510 | 501..617 | 360 | 87.2 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 520..636 | 375..491 | 360 | 87.2 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..489 | 522..617 | 270 | 85.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 541..636 | 375..470 | 270 | 85.4 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 394..510 | 543..659 | 180 | 76.9 | Plus |
| SPH93-RA | 1587 | CG6639-RA | 562..678 | 375..491 | 180 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17454775..17455655 | 1057..176 | 4015 | 98.8 | Minus |
| 2L | 23513712 | 2L | 17455150..17455414 | 639..375 | 875 | 88.7 | Minus |
| 2L | 23513712 | 2L | 17455192..17455456 | 681..417 | 875 | 88.7 | Minus |
| 2L | 23513712 | 2L | 17455726..17455898 | 179..7 | 865 | 100 | Minus |
| 2L | 23513712 | 2L | 17455177..17455393 | 591..375 | 620 | 85.7 | Minus |
| 2L | 23513712 | 2L | 17455240..17455456 | 654..438 | 620 | 85.7 | Minus |
| 2L | 23513712 | 2L | 17455150..17455372 | 597..375 | 605 | 84.8 | Minus |
| 2L | 23513712 | 2L | 17455234..17455456 | 681..459 | 605 | 84.8 | Minus |
| 2L | 23513712 | 2L | 17455214..17455351 | 512..375 | 450 | 88.4 | Minus |
| 2L | 23513712 | 2L | 17455319..17455456 | 617..480 | 450 | 88.4 | Minus |
| 2L | 23513712 | 2L | 17455214..17455330 | 491..375 | 360 | 87.2 | Minus |
| 2L | 23513712 | 2L | 17455340..17455456 | 617..501 | 360 | 87.2 | Minus |
| 2L | 23513712 | 2L | 17455214..17455309 | 470..375 | 270 | 85.4 | Minus |
| 2L | 23513712 | 2L | 17455361..17455456 | 617..522 | 270 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:11 has no hits.
FMO08130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:02 Download gff for
FMO08130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6639-RA | 14..1108 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:43 Download gff for
FMO08130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6639-RA | 20..1114 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:38 Download gff for
FMO08130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPH93-RA | 20..1114 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:38 Download gff for
FMO08130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17454766..17455651 | 180..1064 | 98 | <- | Minus |
| 2L | 17455726..17455901 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:43 Download gff for
FMO08130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17454766..17455651 | 180..1064 | 98 | <- | Minus |
| arm_2L | 17455726..17455901 | 1..179 | 97 | | Minus |
