FMO08131.5prime Sequence
1049 bp (957 high quality bases) assembled on 2010-03-10
> FMO08131.5prime
CAGTCGACATGAGATGGGAACTTCGTTATGGCTGGCAAATTGTCACGTTC
CGAACAAATTGCGCTACTGCTGCCGCCGTTGCATGCCACCAACTTTTGTG
TCCTGTGTCTTTGACAAGTGCAGTGGAGATAATGCCGAATTCCTTTCCGC
CAGAGGGTCGTCGGCGGGAGCGAAGGTCGGGAAACTTGGTCCTTCGAGCC
GGATGCTGCTGCATCGGCAAATACTTTCTCCACAACCGCTGCGCCTCGTC
GGTGAAGAAGGAGTGCACCTTGGGCGAATACTCCGAGCTAATTGTCCCGC
CCACGGCCATCTGCCCGGCGGTACTCGACCGCCAGCGATCCGTGAATCAG
GCTCACAAGGCCACGCACTTCCAAATCACGCCGCCGGACGAGCTGAGCTG
CCCGCTGCTGGTGTTCGTCAATCCGAAGAGCGGCGGTCGCCAGGGGGATC
GCATCCTGCGGAAGTTCCAGTACATGCTCAATCCGCGCCAGGTGTACGAC
CTGTCCAAGGGCGGGCCCAAGGAGGGACTCACACTCTTCAAGGACCTGCC
TCGCTTCAGGGTCATTTGCTGTGGCGGCGACGGCACCGTCGGCTGGGTTT
TGGAAGCCATGGACTCCATAGAGTTGGCCAGCCAGCCGGCCATCGGAGTG
ATTCCCCTGGGAACGGGCAACGACCTGGCTCGCTGTCTCCGCTGGGGCGG
TGGATACGAGGGCGAAAACATCCCCAAACTGATGGACAAGTTTCGAAGAG
CCTCCACCGTCATGCTGGACCGCTGGAGCATCGAGGTGACCAATACTCCG
CACAGCGATGACATGCGACCAAAGGTGACGCTGCACTCGAACATGCAGAA
GTGATTGAGCTGTCGCAAGTGTTGTGGTCGACAATCGCTGATGGACGCTT
CGAGGAAATCCAACGGCAGAGCAAGCAGGTGGCCCACGTCACTGGGGCAC
GGCGGCCTCAAGCACATCCATTTTTGAAGGCCCACCAGACCGGAAACGGA
AATGGTAACCATGGGCCCCGATGGAGTTCGGCAGCATCCGACTCCACAA
FMO08131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgk-RG | 3152 | CG34361-RG | 442..1470 | 7..1036 | 4765 | 98 | Plus |
| Dgk-RK | 4214 | CG34361-RK | 1725..2532 | 228..1036 | 3660 | 97.4 | Plus |
| Dgk-RH | 6282 | CG34361-RH | 2115..2922 | 228..1036 | 3660 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7846756..7846976 | 227..7 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 7844541..7844757 | 828..612 | 1070 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7845033..7845205 | 526..354 | 850 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7845738..7845870 | 360..228 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 7843705..7843917 | 1036..823 | 475 | 90.8 | Minus |
| 2R | 25286936 | 2R | 7844886..7844973 | 612..525 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:10 has no hits.
FMO08131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:04 Download gff for
FMO08131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1480 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:02 Download gff for
FMO08131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1480 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:17 Download gff for
FMO08131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1480 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:17 Download gff for
FMO08131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7844545..7844756 | 613..824 | 99 | <- | Minus |
| 2R | 7844886..7844972 | 526..612 | 100 | <- | Minus |
| 2R | 7845034..7845199 | 360..525 | 100 | <- | Minus |
| 2R | 7845739..7845870 | 228..359 | 100 | <- | Minus |
| 2R | 7846756..7846979 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:02 Download gff for
FMO08131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3732050..3732261 | 613..824 | 99 | <- | Minus |
| arm_2R | 3732391..3732477 | 526..612 | 100 | <- | Minus |
| arm_2R | 3732539..3732704 | 360..525 | 100 | <- | Minus |
| arm_2R | 3733244..3733375 | 228..359 | 100 | <- | Minus |
| arm_2R | 3734261..3734484 | 1..227 | 98 | | Minus |
