FMO08132.5prime Sequence
1091 bp (963 high quality bases) assembled on 2010-03-10
> FMO08132.5prime
CAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGGCCAAATTC
TCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGCACCCGGCA
CACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGCCTATCTGA
GCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGGAAGAGGGC
CAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCCATGCCCGA
CAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTTCCGCAACG
AGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCATTCCAGAAG
TCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCCCGCTGCCT
GGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGAGGATGTGG
GTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTTCGCTGGAA
GATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGCGTGGCCCT
GGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGCTGGTTCGC
TGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACACGGGCTTC
CTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAGATCTATCC
GAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCCGCCGCTGT
TCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGAGTGTCTTC
GGGCACGGCGATTGCTGGACGCCCAACTTTCTGACCAAGTACAACGAACG
GGGACATCGGAGGAGATCATCATCATTGATTTCCAGTTGGGCAGGTGCTC
CTCCTTGGCCTCGACCTGAGCTTCTTCAATCTTATTCCTGCACTAGCCAG
GAGCTGAGGGAACAGCACTACGATGAGCTGCTCCGCGCCTACCTGGAGAA
CGCCCAGGAATTTGATTCTCGATCTCGTGGGCATGCCAGTCATCATCTCC
TGGGAATCACTGCAGAGGAGCTAAGACTTTGTCGCTTGGTT
FMO08132.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2004-RG | 1920 | CG2004-RG | 517..1601 | 9..1087 | 5035 | 98.3 | Plus |
| CG2004-RF | 1509 | CG2004-RF | 106..1190 | 9..1087 | 5035 | 98.3 | Plus |
| CG2004-RD | 1729 | CG2004-RD | 326..1410 | 9..1087 | 5035 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8712807..8713406 | 1074..478 | 2475 | 96.4 | Minus |
| X | 23542271 | X | 8713599..8714068 | 478..9 | 2350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:59 has no hits.
FMO08132.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:05 Download gff for
FMO08132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RA | 218..1314 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:01 Download gff for
FMO08132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RC | 230..1326 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:25 Download gff for
FMO08132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RD | 319..1415 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:25 Download gff for
FMO08132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8712786..8713405 | 479..1091 | 96 | <- | Minus |
| X | 8713599..8714072 | 1..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:01 Download gff for
FMO08132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8606819..8607438 | 479..1091 | 96 | <- | Minus |
| arm_X | 8607632..8608105 | 1..478 | 99 | | Minus |
