FMO08133.5prime Sequence
1142 bp (1016 high quality bases) assembled on 2010-03-10
> FMO08133.5prime
CAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGGGTGTGGTC
TGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGACAGTTTCCA
CTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGCTCGCAAGA
ACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTGGCGTCGAT
GGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTCGAGAGCTC
CTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTCCGCTGGCG
GATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTACGAACACC
ATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCCTCCGGTTT
TGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGCTGGCTTTG
GCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCTCCTTCGGT
AGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCCTCCAACTT
CGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTTTGCTGATA
ACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACGCCGTGGAC
TCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCCGTCCCCAC
TTCCGAGTATTACAGGCACGAGAAGATTGTGTCCACCCCGCAACAGGTGG
TCTACACCATTCCCGGTGGCTCCCAGCGTTACGTTCATCACGAGGAACGT
ATCGTTGACAGCCTACCCAGGTGACCCAGACGGTCCCAGTTCAAACCGCA
CACTACTATCAACGAAAGGTGACCACCACTGCGTCCGCACCACAGCTGGT
TCAGCCAGTTGCCAGCAGCCGTTTGACTTACGGATCGAATGCCGCCTCCA
CCTTTGGCAGCATGCTGCCTCCAACTTCGGCAGCAATGCCGCCACCTACT
TCGGCAGCAATGCCGCCACACTTCGGAGCAATGCCGCCTTTAACTCTCAG
ATTGGCAGTCTTATGGCAGAACATCCAGCAAAAACAGCCAGCTGGCCACT
GCTCACCAACCCAGCAGGCTGCCGGTTCGCAGCTGCTACAAG
FMO08133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fon-RC | 1925 | CG15825-RC | 71..1195 | 9..1123 | 5265 | 98.5 | Plus |
| fon-RB | 2276 | CG15825-RB | 71..1195 | 9..1123 | 5265 | 98.5 | Plus |
| fon-RD | 1916 | CG15825-RD | 71..1186 | 9..1123 | 5120 | 97.7 | Plus |
| fon-RC | 1925 | CG15825-RC | 1049..1105 | 938..993 | 185 | 89.5 | Plus |
| fon-RB | 2276 | CG15825-RB | 1049..1105 | 938..993 | 185 | 89.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19384370..19385364 | 1094..106 | 4555 | 98.8 | Minus |
| 2L | 23513712 | 2L | 19384427..19384507 | 1017..938 | 265 | 91.4 | Minus |
| 2L | 23513712 | 2L | 19386087..19386135 | 57..9 | 245 | 100 | Minus |
| 2L | 23513712 | 2L | 19384974..19385047 | 472..399 | 205 | 85.1 | Minus |
| 2L | 23513712 | 2L | 19384998..19385071 | 496..423 | 205 | 85.1 | Minus |
| 2L | 23513712 | 2L | 19384473..19384530 | 1019..962 | 200 | 89.7 | Minus |
| 2L | 23513712 | 2L | 19385670..19385709 | 106..67 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:09 has no hits.
FMO08133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:16 Download gff for
FMO08133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fon-RB | 68..1195 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:16 Download gff for
FMO08133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fon-RB | 71..1198 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:34 Download gff for
FMO08133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fon-RB | 71..1198 | 9..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:34 Download gff for
FMO08133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19384386..19385363 | 107..1078 | 98 | <- | Minus |
| 2L | 19385670..19385714 | 58..106 | 89 | <- | Minus |
| 2L | 19386087..19386135 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:16 Download gff for
FMO08133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19384386..19385363 | 107..1078 | 98 | <- | Minus |
| arm_2L | 19385670..19385714 | 58..106 | 89 | <- | Minus |
| arm_2L | 19386087..19386135 | 9..57 | 100 | | Minus |
