FMO08135.5prime Sequence
1150 bp (1031 high quality bases) assembled on 2010-03-10
> FMO08135.5prime
CAGTCGACATGAATAAATTGGATTACCCACGTCGCAATGGTACACACAAA
GTTCGAATAACGATATTGTGTGCTAGAAACTTGGCCCGCAAGGATTTATT
TCGTCTACCCGATCCCTTTGCTAAGGTGCAGGTGGATGGAACTGGGCAGG
TGTACTCGACGGAAATAAGCAAATCCTCTCTGGATCCAAAATGGAATGCA
CATTACGATTTGTTTTTGGGCATTGGGGATGCCATTACGATAACTGTGTG
GAATCAGCGAAAGATACACAAGGGCAGTGGATTCCTGGGCTGTGTGAGGA
TACCGGCGTTCAACATACAGAGCCTCAAAGGAGCTGGGTTTCAACGCTTG
GATCTGGGAAAACTGTCGCCGGATGACGATGAGCTTGTACGTGGTCAAAT
CATCATTTCGTTGCTCTCGAAGGACGGTCCTAGTAGTGGTAATCCTCTGG
CCATTGTAGGACCCAGTGGTGATGTCCGTGGACCGTCGGAAGATGACTCC
TCGGAAGATAGTTTGCCAGAGGGTTGGGAGGAGCGGCGTACGGACAACGG
TCGAGTTTACTATGTGAACCATGCCACCAAATCGACGCAGTGGGATCGAC
CAAGACAGCCAGGAGTAGTTGGATCCAGTCACGCCACTTCACCACAGCAA
CGGCACAACACGCACAATGGCAACAGCGGTGATCGACAAGCTCCGGCTGG
GCCAACCCGCTCTACAACTTGCACGAACCTGATGAATAACGGTCATCGCA
GCCGGGACTTGTCTGTGACGGCTTCAGATGAACGTAGACACTCTACGGAA
ATCCTGTCCAGCGTGGGGCAAGGAGAACACCAGCCCCACAACGCTCGTTT
CGGCCACGACAACGCCTGGCAAAAAACATCCTCATCGAACTCATCCTCGG
CAGGTGGTCGCACTTTGGAGCAGCGTCCGACAAACGAACCAGCACACCCA
CCAGCAGTACGACATCGGCGTCGGGTCGCCTGCATAGCAACGACATCATG
TAAAAACACCAAAGCACCAACGAATGGCCATGCTCGGCCAGAGTCCAGGC
CCACATTCCTCACGGGTCAGCGGACTATGTAATGGAAATGCTCGATGGAG
TACCACCGAATGGATGGCAGGCGGGCCACCTCGAGTGCTAGTACGGATGG
FMO08135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smurf-RB | 5365 | CG4943-RB | 905..2062 | 9..1150 | 5200 | 97.5 | Plus |
| Smurf-RA | 4885 | CG4943-RA | 905..2062 | 9..1150 | 5200 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17600142..17600900 | 340..1093 | 3345 | 98.2 | Plus |
| 2R | 25286936 | 2R | 17599850..17600086 | 103..339 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 17593850..17593904 | 9..63 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 17593966..17594006 | 64..104 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:02 has no hits.
FMO08135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:32:02 Download gff for
FMO08135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lack-RA | 882..1989 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:38 Download gff for
FMO08135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lack-RA | 905..2012 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:25 Download gff for
FMO08135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smurf-RA | 905..2012 | 9..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:25 Download gff for
FMO08135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17600142..17600918 | 340..1108 | 97 | | Plus |
| 2R | 17593850..17593904 | 9..63 | 100 | -> | Plus |
| 2R | 17593966..17594004 | 64..102 | 100 | -> | Plus |
| 2R | 17599850..17600086 | 103..339 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:38 Download gff for
FMO08135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13481355..13481409 | 9..63 | 100 | -> | Plus |
| arm_2R | 13481471..13481509 | 64..102 | 100 | -> | Plus |
| arm_2R | 13487355..13487591 | 103..339 | 100 | -> | Plus |
| arm_2R | 13487647..13488423 | 340..1108 | 97 | | Plus |
