FMO08142.5prime Sequence
1117 bp (985 high quality bases) assembled on 2010-03-10
> FMO08142.5prime
CAGTCGACATGCTTCTCAAGGTATTTTTACTGGTCTTCATCGCCACCCAC
CACTTGGTAGACTCAGCGGGTCCCCTTTCCAATATAGCCAGCGAAAGTAA
ACCAAAATCGTTCGAGGAGATTTTGCCTTCGGCGGTTCCCTTTGAGACCT
CACACAAACATCCGGGTGCCGGGGAGTGGGTGGAGGGATTTCAAACCTCC
CATAAAATAAGCATAAGGGCCACCGATTCCGCTGACTATTCGATGAATCT
GCTGCCTACTAAAGAGCGACCCGAATTGAACCCCGTTTTGAGTGCACTTA
TCAACGAAGATGTTATGAAGAGCATCGAGGCCAAAAGAGCCATAGAAGAA
GAGGAGCTGGCCGAGGTTAGGCGTGAAATTGAGCAGGCCGCCGTGTTAGA
GTTGGCCCAGAAGAGGGGCTTTACCACTACTGAGACACCTGCTCTTCTGT
TGACGACTTTGCCCACAGCTGGCAAGAAGCTCGATAACTTGGATGAGGAC
ATAGTCCTGGATCCTCACGAAGATTTTATCAACCAAAATTTTGCCCTGGA
GAGTGCGGGTAGTGAGAACAGCAAGAAATCCCGAATAGAGATTAAAAAGG
GACCCAATGGCCAGGACTACGAGTACGAGTATGTCTATTACTATGAAGAG
GACGATGACTCAAGCAAGGTGGATCCATCTGCAGAGCCCGACACGCGTGG
TAAGACTAGATATACCAATATCGAGAGGAGCACGACGGCCACTCCGAGTG
GAAATAGCCTACAGAGTGACAAGGCCAAAGGAAGATCATCTGATACCTCT
GAAGATATAGAGGCTGAACGGCTTCCGATGATCACTCGGTTTCCCAGTCG
TGGCAAGAACATTGAAGTGCCACCAACAGCAGCTCTTGATTCTTTGGAAT
CGCTGCCGAGCGCAAGAGATTAGTGTTAAGCGCCCCAGTTTGGAGTTGGT
GGATAATGCTACCTCTCACACGGATGAGAAACAGACAAGGCCGCTCGGCA
GGTGAAATGAATTAAAACATTATTGCTATCTAACATGAGGAGCAGCAAAG
AATGCACAGTTAGGAGGACAGCAGAAAAGAAGACGATTGCATCATCGAGA
ATTGGACTACTCCTTCA
FMO08142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3777-RE | 3428 | CG3777-RE | 260..1300 | 9..1042 | 4880 | 98.5 | Plus |
| CG3777-RD | 4130 | CG3777-RD | 660..1700 | 9..1042 | 4880 | 98.5 | Plus |
| CG3777-RC | 3402 | CG3777-RC | 234..1274 | 9..1042 | 4880 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 346149..347114 | 23..986 | 4670 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:05 has no hits.
FMO08142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:08 Download gff for
FMO08142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RC | 221..1270 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:13 Download gff for
FMO08142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RA | 199..1248 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:24 Download gff for
FMO08142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RC | 225..1274 | 1..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:24 Download gff for
FMO08142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 346149..347175 | 23..1042 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:13 Download gff for
FMO08142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 240182..241208 | 23..1042 | 98 | | Plus |
