FMO08143.5prime Sequence
1080 bp (954 high quality bases) assembled on 2010-03-10
> FMO08143.5prime
CAGTCGACATGGCCGTTAAGCAGAATAACAGCGAGGCGGGTGATAATGCC
TCGGATAATGCCGGAGGAGCTGGCAACGGCATTCCGCCCAACGCCAAACC
CATGTCCGCGAACGGAATGGCGAATGCCGAAGAGAACGTATTGCCAAAGG
GCATGGACACGGGTTCGCCCGCTGGCGAGAGCCTGAACTCCAACCGATCG
GGCAAGCGGGATATTAAGGCCCTGCTGGCATACCTCCAAAGCATCGATAT
GCCGGAGCAAGGCCACAATGTGATGGCCATCTGCGAGAGGGTTATCGTGG
ACTTGGCCCGTCTGCAAATTCCACGAGGCGCATCCTGTCCACGCCTAAAG
GAAGACGTCTGCCAGGTCGGTGCCTTTCTGGCTACGCGCAACGAGAAGTT
CCACCAAATGTTCTACCTGCGTGTCGTCTACGAGCTGATCACCAAGTCGC
CATTCGAGCCACCACCCTCGTGTGCCGTGGCCATTGTGTTCCAGCTGTTC
GACTCCACGCAGATCCTGGAGGCTGTACACTCGCTGCTGGAACAGAATGT
GCAGGACTCGAGCATTAAGAAGACGGTGAACCTGCTCTGTGATTGGATCA
CGTACTGCACCTTTTGCAGCACTCTCAATCTTTGGGTGCTGGCGCTGCTC
AAGGGGCTAAGGGATCAGGGCAAAATGGCGCTGCTCGACGAGATTGCAAT
GGACAACATCGAGAAGCTGTTCCACGTGATGATCTTTCCGGCGCTGAGGC
AAAAGGCCGCACCGGTTGTGTTTCACATGCTGTCAACGATTAATCAGACC
CCCGAGGTTTTTCACAAGATCTTGCCAAGGATCCCACGAGTCCTGCAGTA
TGTGAAGATCAGTCGACCACCATGGACGAGATTGGCCTGGAAACCAAGAA
ATGTCTGCTGCAACCGGTCGACCTAACCAGCCGCCCTATGCTACGTTTCT
ATGATCAGATGAGATCTATTGTCGCACCAAGAAAGCCCTGCGACCTTATG
AGCCCTCCTCCGATTAGCTGGGTCTTGACAAGCAATGCATGAAATTGCCC
ACCCCGTGGGCTCGCGCATGCAAGCTTCAT
FMO08143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 3530 | CG8830-RA | 552..1613 | 5..1064 | 4825 | 97.6 | Plus |
| DUBAI-RB | 4024 | CG8830-RB | 566..1627 | 5..1064 | 4825 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12434472..12435285 | 818..5 | 4055 | 99.9 | Minus |
| 2R | 25286936 | 2R | 12434216..12434408 | 1007..817 | 610 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:45 has no hits.
FMO08143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:09 Download gff for
FMO08143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RA | 543..1567 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:51 Download gff for
FMO08143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RB | 564..1588 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:15 Download gff for
FMO08143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DUBAI-RB | 564..1588 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:15 Download gff for
FMO08143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12434198..12434406 | 819..1025 | 92 | <- | Minus |
| 2R | 12434472..12435287 | 1..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:51 Download gff for
FMO08143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8321703..8321911 | 819..1025 | 92 | <- | Minus |
| arm_2R | 8321977..8322792 | 1..818 | 99 | | Minus |
